Quel$futur$pour$l’antibiothérapie? · - Stable vis-à-vis des β-lactamases: BLSE,...

39
Mai 2015, XVIIIème JRP Quel futur pour l’antibiothérapie? JP Bedos, Réanimation, CH Versailles

Transcript of Quel$futur$pour$l’antibiothérapie? · - Stable vis-à-vis des β-lactamases: BLSE,...

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Mai  2015,  XVIIIème  JRP

Quel  futur  pour  l’antibiothérapie?J-­‐P  Bedos,  Réanimation,  CH  Versailles

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Pourquoi  cette  question?

-­‐ Risque  de  disparition  des  antibiotiques?→  R&D  en  antibiotiques  diminue    +++  (temps;  coût;  risque;  retour  sur  investissement  ....)…  pas  de  nouvelle  classe  d’antibiotique…

-­‐ Risque  d’inefficacité  des  antibiotiques?  (Post-­‐antibiotic era)→WEF  2013:  ...  « the  greatest risk to  human health comes in  the  form of  antibiotic -­‐resistant bacteria. »  

-­‐ « We live  in  a  bacterial word... »!!  →  Guerre  permanente  entre  bactéries  et  antibiotiques  =  SURVIE  →Tout  est  « déjà »  dans  la  nature...  et  intimement  lié!!!:  les  bactéries  -­‐ les  

antibiotiques  -­‐ la  résistance

-­‐ La  résistance  des  bactéries  aux  antibiotiques   existe  depuis  « toujours »  dans  la  nature...  et  à  des  molécules  non  encore  inventées  !!!

-­‐ L’homme  =    Antibiotiques    sur  de  nouvelles  cibles  ...  vies  sauvées  +++...  Mais  pression  de  sélection  croissante  ►« épuisement »  des  cibles  ...  =  RESISTANCE  ↑↑↑

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3

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Peut-­‐on  donc  réellement  ‘sauver’  les  antibiotiques  ?

Pas sûr !!! : Trois idées fausses

ü Seul le mauvais usage des ATB expose à l’émergence de résistance

ü Certains ATB ne sont pas à risque d’émergence de résistances

ü La résistance aux ATB est un phénomène créé par l’Homme

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Peut-­‐on  donc  réellement  ‘sauver’  les  antibiotiques  ?

ü Seul le mauvais usage des ATB expose à l’émergence de résistance

FAUX: Les bons usages ont le même impact sur les flores !

ü Certains ATB ne sont pas à risque d’émergence de résistances

FAUX: En détruisant les bactéries sensibles, on favorise de facto l’émergence de bactéries résistantes !

ü La résistance aux ATB est un phénomène créé par l’HommeFAUX: Les micro-organismes savent résister depuis l’ère des temps !

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! Grotte Lechuguilla, Nouveau Mexique" zones isolées de la surface de la terre de 400 m" depuis > 4 M d’années" 4 visiteurs depuis la découverte

! Résistance aux ATBnaturelleATB de synthèsedaptomycine, B-lactamines.. !!!

Antibiotic Resistance Is Prevalent in an Isolated CaveMicrobiomeKirandeep Bhullar1, Nicholas Waglechner1, Andrew Pawlowski1, Kalinka Koteva1, Eric D. Banks2,

Michael D. Johnston2, Hazel A. Barton2, Gerard D. Wright1*

1 M.G. DeGroote Institute for Infectious Disease Research, Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada,

2 Department of Biology, University of Akron, Akron, Ohio, United States of America

Abstract

Antibiotic resistance is a global challenge that impacts all pharmaceutically used antibiotics. The origin of the genesassociated with this resistance is of significant importance to our understanding of the evolution and dissemination ofantibiotic resistance in pathogens. A growing body of evidence implicates environmental organisms as reservoirs of theseresistance genes; however, the role of anthropogenic use of antibiotics in the emergence of these genes is controversial. Wereport a screen of a sample of the culturable microbiome of Lechuguilla Cave, New Mexico, in a region of the cave that hasbeen isolated for over 4 million years. We report that, like surface microbes, these bacteria were highly resistant toantibiotics; some strains were resistant to 14 different commercially available antibiotics. Resistance was detected to a widerange of structurally different antibiotics including daptomycin, an antibiotic of last resort in the treatment of drug resistantGram-positive pathogens. Enzyme-mediated mechanisms of resistance were also discovered for natural and semi-syntheticmacrolide antibiotics via glycosylation and through a kinase-mediated phosphorylation mechanism. Sequencing of thegenome of one of the resistant bacteria identified a macrolide kinase encoding gene and characterization of its productrevealed it to be related to a known family of kinases circulating in modern drug resistant pathogens. The implications ofthis study are significant to our understanding of the prevalence of resistance, even in microbiomes isolated from humanuse of antibiotics. This supports a growing understanding that antibiotic resistance is natural, ancient, and hard wired in themicrobial pangenome.

Citation: Bhullar K, Waglechner N, Pawlowski A, Koteva K, Banks ED, et al. (2012) Antibiotic Resistance Is Prevalent in an Isolated Cave Microbiome. PLoS ONE 7(4):e34953. doi:10.1371/journal.pone.0034953

Editor: Ramy K. Aziz, Cairo University, Egypt

Received December 13, 2011; Accepted March 8, 2012; Published April 11, 2012

Copyright: ! 2012 Bhullar et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permitsunrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Funding: This research was supported by the Canada Research Chairs program (GDW), a Canadian Institutes of Health Research Operating Grant (MT-13536 toGDW), the National Science Foundation Microbial interactions and Processes Program (NSF0643462 to HAB) and a Canadian Institutes of Health ResearchFrederick Banting and Charles Best Canada Graduate Scholarship to KB. The funders had no role in study design, data collection and analysis, decision to publish,or preparation of the manuscript.

Competing Interests: The authors have declared that no competing interests exist.

* E-mail: [email protected]

Introduction

The question of whether the extensive presence of resistanceelements in microbes is primarily the result of human activity iscontroversial. Investigation of antibiotic resistance in bacteria fromthe Galapagos, a remote environment with limited humanoccupation and presumably low anthropogenic antibiotic expo-sure, revealed that acquired antibiotic resistance genes were absentin bacteria isolated from terrestrial animals [1]. Similarly, plasmidsfrom bacterial collections that predate the antibiotic era are largelydevoid of resistance elements [2,3]. This suggests that the presenceof antibiotics is an important selective force in evolution andspread of antibiotic resistance genes and can contribute signifi-cantly in altering the natural microbiota. In a survey of soilsamples from the Netherlands spanning the pre-and post-antibioticeras (1940–2008), an increase in the relative abundance ofantibiotic resistance genes for major antibiotic families (ß-lactams,tetracyclines and macrolides) was observed in contemporary soilsamples in comparison to pre-antibiotic era samples [4]. This bodyof evidence is consistent with the hypothesis that widespreadresistance is a modern phenomenon linked to human use ofantibiotics.

On the other hand, antibiotics and antibiotic biosyntheticpathways are believed to have evolved over millions of yearssuggesting that antibiotic resistance is an equally ancientphenomenon [5,6,7]. Indeed, we have recently shown thatantibiotic resistance elements were abundant and diverse inancient DNA dating from the Pleistocene (30,000 years ago) [8].The concept of the antibiotic resistome predicts that resistance isthe result of dynamic and competitive microbial interactions thatpre-date human use of antibiotics [9,10]. Consistent with thisnotion is our survey of contemporary soil actinomycetes thatreported widespread multidrug resistance even in the absence ofobvious human sources of antibiotics [11]. There have also beenreports of antibiotic resistance in microorganisms isolated fromextreme natural habitats including the deep terrestrial subsurface[12] and the deep ocean [13]; environments presumably largelyabsent of human influence. These studies support a hypothesis thatresistance is an ancient and genetically rich natural phenomenon,deeply embedded in the microbial pangenome.

One of the challenges in measuring contemporary environ-mental resistance is rigorously ensuring the absence of anthropo-genic sources of antibiotics as a selective pressure for theacquisition of ‘modern’ resistance genes. A survey of a diverse

PLoS ONE | www.plosone.org 1 April 2012 | Volume 7 | Issue 4 | e34953

Antibiotic Inactivation by Gram-negative isolatesWe observed little enzyme-mediated antibiotic inactivation in

Gram-negative isolates (Table 2), suggesting that there are othermolecular mechanisms of resistance at play such as efflux, targetmodification, or barriers to entry. Three strains belonging to thegenera Agrobacterium and Ochoromobactrum displayed chloramphen-icol inactivation, which we determined by LC/MS to be themodification by acetylation (Table S5); a well-established resis-tance mechanism both in Gram-positive and Gram-negativebacteria [33].

Characterization of a B. paraconglomeratum macrolidekinase

Phosphorylation of macrolides in pathogenic bacteria is agrowing clinical problem [38] catalyzed by a family of macrolide

phosphotransferases (MPHs) [36,39]. In order to probe for thepresence of possible mph genes in macrolide inactivating B.paraconglomeratum, we prepared a draft genome sequence usingRoche 454 and Illumina platforms. A gene encoding a predictedmacrolide kinase, mphE, was identified (Figure 6). We expressedthe gene product in E. coli, purified the enzyme and determined itsactivity and specificity using steady state kinetics (Table 3). Theenzyme efficiently modified 14-, 15-, and 16-membered macrolideantibiotics aligning this enzyme with known type II MPHs (basedon previous characterization of these enzymes in E. coli isolates)[40,41]. The regiospecificity of phosphorylation of telithromycinwas determined by multidimensional and multinuclear magneticresonance analysis to be at the 29-hydroxyl group of thedesosamine sugar (Figures S3 and S4, Tables S6 and S7).

The genome of another Brachybacterium species has beenreported, Brachybacterium faecium DSM 4810, a terrestrial soil isolate

Figure 2. Resistance levels of Lechuguilla cave bacteria at 20 mg/ml against various antibiotics: (top) Gram-positive strains (bottom)Gram-negative strains. Antibiotics are grouped according to their mode of action/target, where each color represents a different target.doi:10.1371/journal.pone.0034953.g002

Antibiotic Resistance in Cave Bacteria

PLoS ONE | www.plosone.org 4 April 2012 | Volume 7 | Issue 4 | e34953

J$27'8

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Nature,  Sept  2011

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CID  May  2013

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L’industrie  ne  développe  plus  de  nouveaux  antibiotiques  intéressants??....

CID,  June 2013

►« New  incentives »...:  GAIN  Act (  10  ans  d’exclusivité....)  ,  BARDA  (Biomed Adv Resand  Dev  Authority)  →  Argent  +++;  « Facilitations »  et  ...Start-­‐up)

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Il  y  a  de  « nouveaux »  antibiotiques  anti  Gram  – (BLSE  et  carbapénémases)  très  intéressants...  now and  in  the  future    !!

-Dérivé semi-synthétique 6-α-méthoxy de la ticarcilline

- Molécule « orpheline », Belgique, Royaume Uni, AMM européenne en décembre 2014

- Spectre étroit: entérobactéries, Burkholderia cepacia,H. influenzae, M. catarrhalis, N. gonorrhoeae

- Stable vis-à-vis des β-lactamases: BLSE, céphalosprinases déréprimées

- Efficace in vitro sur 92% des entérobactéries BLSE +

-Liaison protéique élevée: 70-80%

- Demi-vie 4-5h, 2 injections de 2g par jour (IM, IV) (ou en REA: 2g x 3 ou 6g IVSE)

- Elimination rénale, pas de métabolisme hépatique

- Indications: BLSE +++ dans infections urinaires hautes, respiratoires, bactériémies

→  Now :  La  témocilline (Negaban®),  Laboratoire  Eumedica

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Quelles  différences  et  apports  du  CEFTOBIPROLE  (Mabelio®)  Laboratoire  Basilea (  AMM  européenne  récente!!!)  versus  la  

CEFTAROLINE?

• Spectre  d’activité  plus  large  du  ceftobiprole:  – Activité  et  spectre  proche  sur  CG+  dont  SDMR  ET  SBMR,  Sprésistant  aux  CIIIG,  E.faecalis et  faecium sensible  à  l’amoxicilline,  E.faecalis résistant  à  la  vancomycine

– Spectre  plus  large  +++  sur  les  BG-­ proche  de  celui  de  la  ceftazidime,  avec  en  particulier  une  activité  sur  P.  aeruginosamais  réduite  sur  Proteus  indol +,  Enterobacter sp,  Serratiamarcescens

– Activité  limitée  sur  B.cepacia,  S.maltophilia et  Acinetobacter– Pas  d’activité  sur  EBLSE  ou  D-­Amp C– Pas  d’activité  sur  Bacteroides sp et  Lactobacillus,  Cl  .difficile

► AMM  pour  Pneumonies  nosocomiales  non  ventilées  et  PACà  500  mg  en  2h  toutes  les  8h  

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A  brève  échéance...

• Ceftazidime – avibactam (ATU    puis  AMM  en  2016)

• Ceftolozane – tazobactam (phase  III,  IUc,  VAP,  IIA)

• Ceftaroline – avibactam (Phase  II,  IUc et  IIA)

A  plus  longue  échéance  (phase  I  et  II  ...  III)► Eravacycline► Plazomicine►Imipénème +  MK-­7655►Brilacidine►Carbavance►BAL  300372►Delafloxacine►Amikacine inhalé►Pleuromutilines........  …………………….Et  d’autres  encore  !!

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n engl j med 368;4 nejm.org january 24, 2013

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tation, like many of the resource constraints that affect progress, is blamed on the long-standing U.S. economic embargo, but there may be other forces in the cen-tral government working against rapid, easy communication among Cubans and with the United States.

As a result of the strict eco-nomic embargo, Cuba has devel-oped its own pharmaceutical industry and now not only man-ufactures most of the medications in its basic pharmacopeia, but also fuels an export industry. Re-sources have been invested in de-veloping biotechnology expertise to become competitive with ad-vanced countries. There are Cuban academic medical journals in all the major specialties, and the med-ical leadership is strongly encour-aging research, publication, and stronger ties to medicine in other Latin American countries. Cuba' s medical faculties, of which there are now 22, remain steadily fo-cused on primary care, with fam-ily medicine required as the first

residency for all physicians, even though Cuba now has more than twice as many physicians per cap-ita as the United States.4 Many of those physicians work outside the country, volunteering for two or more years of service, for which they receive special compensation. In 2008, there were 37,000 Cuban health care providers working in 70 countries around the world.5 Most are in needy areas where their work is part of Cuban for-eign aid, but some are in more developed areas where their work brings financial benefit to the Cuban government (e.g., oil sub-sidies from Venezuela).

Any visitor can see that Cuba remains far from a developed country in basic infrastructure such as roads, housing, plumb-ing, and sanitation. Nonetheless, Cubans are beginning to face the same health problems the devel-oped world faces, with increas-ing rates of coronary disease and obesity and an aging population (11.7% of Cubans are now 65

years of age or older). Their un-usual health care system ad-dresses those problems in ways that grew out of Cuba' s peculiar political and economic history, but the system they have created ó with a physician for everyone, an early focus on prevention, and clear attention to community health ó may inform progress in other countries as well.

Disclosure forms provided by the authors are available with the full text of this article at NEJM.org.

1. Keck CW, Reed GA. The curious case of Cuba. Am J Public Health 2012;102(8):e13-e22.2. Drain PK, Barry M. Fifty years of U.S. em-bargo: Cubaí s health outcomes and lessons. Science 2010;328:572-3.3. World population prospects, 2011 revision. New York: United Nations (http://esa.un.org/ unpd/wpp/Excel-Data/mortality.htm).4. The world factbook. Washington, DC: Central Intelligence Agency, 2012 (https://www.cia.gov/library/publications/the-world- factbook).5. Gorry C. Cuban health cooperation turns 45. MEDICC Rev 2008;10:44-7.

DOI: 10.1056/NEJMp1215226Copyright © 2013 Massachusetts Medical Society.

A Different Model ó Medical Care in Cuba

The Future of Antibiotics and ResistanceBrad Spellberg, M.D., John G. Bartlett, M.D., and David N. Gilbert, M.D.

In its recent annual report on global risks, the World Eco-

nomic Forum (WEF) concluded that ì arguably the greatest risk . . . to human health comes in the form of antibiotic-resistant bacteria. We live in a bacterial world where we will never be able to stay ahead of the mutation curve. A test of our resilience is how far behind the curve we al-low ourselves to fall.î 1

Traditional practices in infec-tion control, antibiotic steward-ship, and new antibiotic develop-

ment are cornerstones of society' s approach to combating resistance and must be continued. But the WEF report underscores the facts that antibiotic resistance and the collapse of the antibiotic research-and-development pipeline continue to worsen despite our ongoing efforts on all these fronts. If we' re to develop countermeasures that have lasting effects, new ideas that complement traditional ap-proaches will be needed.

New ideas are often based on the recognition of old truths. Pro-

karyotes (bacteria) ì inventedî anti-biotics billions of years ago, and resistance is primarily the result of bacterial adaptation to eons of antibiotic exposure. What are the fundamental implications of this reality? First, in addition to antibiotics' curative power, their use naturally selects for preexist-ing resistant populations of bac-teria in nature. Second, it is not just ì inappropriateî antibiotic use that selects for resistance. Rath-er, the speed with which resis-tance spreads is driven by micro-

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n engl j med 368;4 nejm.org january 24, 2013300

bial exposure to all antibiotics, whether appropriately prescribed or not. Thus, even if all inappro-priate antibiotic use were elimi-nated, antibiotic-resistant infec-tions would still occur (albeit at lower frequency).

Third, after billions of years of evolution, microbes have most likely invented antibiotics against

every biochemical target that can be attacked ó and, of necessity, developed resistance mechanisms to protect all those biochemical targets. Indeed, widespread anti-biotic resistance was recently dis-covered among bacteria found in underground caves that had been geologically isolated from the sur-face of the planet for 4 million

years.2 Remarkably, resistance was found even to synthetic antibiot-ics that did not exist on earth until the 20th century. These re-sults underscore a critical reality: antibiotic resistance already exists, widely disseminated in nature, to drugs we have not yet invented.

Thus, from the microbial per-spective, all antibiotic targets are

The Future of Antibiotics and Resistance

New Interventions to Address the Antibiotic-Resistance Crisis.*

Intervention Status

Preventing infection and resistance

ì Self-cleaningî hospital rooms; automated disinfectant application through misting, vapor, radiation, etc.

Some commercially available but require clinical validation; more needed

Novel drug-delivery systems to replace IV catheters; regenerative-tissue tech-nology to replace prosthetics; superior, non invasive ventilation strategies

Basic science and conceptual stages

Improvement of population health and health care systems to reduce ad-missions to hospitals and skilled nursing facilities

Implementation research stage

Niche vaccines to prevent resistant bacterial infections Basic and clinical development stage

Refilling antibiotic pipeline by aligning economic and regulatory approaches

Government or nonprofit grants and contracts to defray up-front R&D costs and establish nonprofits to develop antibiotics

Models in place, expansion needed in number and scope; new nonprofit corporations needed

Institution of novel approval pathways (e.g., Limited Population Antibiotic Drug proposal)

Proposed, legislative and regulatory action needed

Preserving available antibiotics, slowing resistance

Public reporting of antibiotic-use data as a basis for benchmarking and re-imbursement

Policy action needed to develop and implement

Development of and reimbursement for rapid diagnostic and biomarker tests to enable appropriate use of antibiotics

Basic and applied research and policy action needed

Elimination of use of antibiotics to promote livestock growth Legislation proposed

New waste-treatment strategies; targeted chemical or biologic degradation of antibiotics in waste

One strategy approaching clinical trials

Studies to define shortest effective courses of antibiotics for infections Some trials completed

Developing microbe-attacking treatments with diminished potential to drive resistance

Preclinical, proof-of-principle stage

Immune-based therapies, such as infusion of monoclonal antibodies and white cells that kill microbes

Antibiotics or biologic agents that doní t kill bacteria but alter their ability to trigger inflammation or cause disease

Developing treatments attacking host targets rather than microbial targets to avoid selective pressure driving resistance

Preclinical, proof-of-principle stage

Direct moderation of host inflammation in response to infection (e.g., cyto-kine agonists or antagonists, PAMP receptor agonists)

Sequestration of host nutrients to prevent microbial access to nutrients

Probiotics that compete with microbial growth

* IV denotes intravenous, PAMP pathogen-associated molecular pattern, and R&D research and development.

The New England Journal of Medicine Downloaded from nejm.org at INSERM DISC DOC on January 8, 2014. For personal use only. No other uses without permission.

Copyright © 2013 Massachusetts Medical Society. All rights reserved.

PERSPECTIVE

n engl j med 368;4 nejm.org january 24, 2013300

bial exposure to all antibiotics, whether appropriately prescribed or not. Thus, even if all inappro-priate antibiotic use were elimi-nated, antibiotic-resistant infec-tions would still occur (albeit at lower frequency).

Third, after billions of years of evolution, microbes have most likely invented antibiotics against

every biochemical target that can be attacked ó and, of necessity, developed resistance mechanisms to protect all those biochemical targets. Indeed, widespread anti-biotic resistance was recently dis-covered among bacteria found in underground caves that had been geologically isolated from the sur-face of the planet for 4 million

years.2 Remarkably, resistance was found even to synthetic antibiot-ics that did not exist on earth until the 20th century. These re-sults underscore a critical reality: antibiotic resistance already exists, widely disseminated in nature, to drugs we have not yet invented.

Thus, from the microbial per-spective, all antibiotic targets are

The Future of Antibiotics and Resistance

New Interventions to Address the Antibiotic-Resistance Crisis.*

Intervention Status

Preventing infection and resistance

ì Self-cleaningî hospital rooms; automated disinfectant application through misting, vapor, radiation, etc.

Some commercially available but require clinical validation; more needed

Novel drug-delivery systems to replace IV catheters; regenerative-tissue tech-nology to replace prosthetics; superior, non invasive ventilation strategies

Basic science and conceptual stages

Improvement of population health and health care systems to reduce ad-missions to hospitals and skilled nursing facilities

Implementation research stage

Niche vaccines to prevent resistant bacterial infections Basic and clinical development stage

Refilling antibiotic pipeline by aligning economic and regulatory approaches

Government or nonprofit grants and contracts to defray up-front R&D costs and establish nonprofits to develop antibiotics

Models in place, expansion needed in number and scope; new nonprofit corporations needed

Institution of novel approval pathways (e.g., Limited Population Antibiotic Drug proposal)

Proposed, legislative and regulatory action needed

Preserving available antibiotics, slowing resistance

Public reporting of antibiotic-use data as a basis for benchmarking and re-imbursement

Policy action needed to develop and implement

Development of and reimbursement for rapid diagnostic and biomarker tests to enable appropriate use of antibiotics

Basic and applied research and policy action needed

Elimination of use of antibiotics to promote livestock growth Legislation proposed

New waste-treatment strategies; targeted chemical or biologic degradation of antibiotics in waste

One strategy approaching clinical trials

Studies to define shortest effective courses of antibiotics for infections Some trials completed

Developing microbe-attacking treatments with diminished potential to drive resistance

Preclinical, proof-of-principle stage

Immune-based therapies, such as infusion of monoclonal antibodies and white cells that kill microbes

Antibiotics or biologic agents that doní t kill bacteria but alter their ability to trigger inflammation or cause disease

Developing treatments attacking host targets rather than microbial targets to avoid selective pressure driving resistance

Preclinical, proof-of-principle stage

Direct moderation of host inflammation in response to infection (e.g., cyto-kine agonists or antagonists, PAMP receptor agonists)

Sequestration of host nutrients to prevent microbial access to nutrients

Probiotics that compete with microbial growth

* IV denotes intravenous, PAMP pathogen-associated molecular pattern, and R&D research and development.

The New England Journal of Medicine Downloaded from nejm.org at INSERM DISC DOC on January 8, 2014. For personal use only. No other uses without permission.

Copyright © 2013 Massachusetts Medical Society. All rights reserved.

Spellberg B et al. N Engl J Med 2013

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PERSPECTIVE

299

tation, like many of the resource constraints that affect progress, is blamed on the long-standing U.S. economic embargo, but there may be other forces in the cen-tral government working against rapid, easy communication among Cubans and with the United States.

As a result of the strict eco-nomic embargo, Cuba has devel-oped its own pharmaceutical industry and now not only man-ufactures most of the medications in its basic pharmacopeia, but also fuels an export industry. Re-sources have been invested in de-veloping biotechnology expertise to become competitive with ad-vanced countries. There are Cuban academic medical journals in all the major specialties, and the med-ical leadership is strongly encour-aging research, publication, and stronger ties to medicine in other Latin American countries. Cuba' s medical faculties, of which there are now 22, remain steadily fo-cused on primary care, with fam-ily medicine required as the first

residency for all physicians, even though Cuba now has more than twice as many physicians per cap-ita as the United States.4 Many of those physicians work outside the country, volunteering for two or more years of service, for which they receive special compensation. In 2008, there were 37,000 Cuban health care providers working in 70 countries around the world.5 Most are in needy areas where their work is part of Cuban for-eign aid, but some are in more developed areas where their work brings financial benefit to the Cuban government (e.g., oil sub-sidies from Venezuela).

Any visitor can see that Cuba remains far from a developed country in basic infrastructure such as roads, housing, plumb-ing, and sanitation. Nonetheless, Cubans are beginning to face the same health problems the devel-oped world faces, with increas-ing rates of coronary disease and obesity and an aging population (11.7% of Cubans are now 65

years of age or older). Their un-usual health care system ad-dresses those problems in ways that grew out of Cuba' s peculiar political and economic history, but the system they have created ó with a physician for everyone, an early focus on prevention, and clear attention to community health ó may inform progress in other countries as well.

Disclosure forms provided by the authors are available with the full text of this article at NEJM.org.

1. Keck CW, Reed GA. The curious case of Cuba. Am J Public Health 2012;102(8):e13-e22.2. Drain PK, Barry M. Fifty years of U.S. em-bargo: Cubaí s health outcomes and lessons. Science 2010;328:572-3.3. World population prospects, 2011 revision. New York: United Nations (http://esa.un.org/ unpd/wpp/Excel-Data/mortality.htm).4. The world factbook. Washington, DC: Central Intelligence Agency, 2012 (https://www.cia.gov/library/publications/the-world- factbook).5. Gorry C. Cuban health cooperation turns 45. MEDICC Rev 2008;10:44-7.

DOI: 10.1056/NEJMp1215226Copyright © 2013 Massachusetts Medical Society.

A Different Model ó Medical Care in Cuba

The Future of Antibiotics and ResistanceBrad Spellberg, M.D., John G. Bartlett, M.D., and David N. Gilbert, M.D.

In its recent annual report on global risks, the World Eco-

nomic Forum (WEF) concluded that ì arguably the greatest risk . . . to human health comes in the form of antibiotic-resistant bacteria. We live in a bacterial world where we will never be able to stay ahead of the mutation curve. A test of our resilience is how far behind the curve we al-low ourselves to fall.î 1

Traditional practices in infec-tion control, antibiotic steward-ship, and new antibiotic develop-

ment are cornerstones of society' s approach to combating resistance and must be continued. But the WEF report underscores the facts that antibiotic resistance and the collapse of the antibiotic research-and-development pipeline continue to worsen despite our ongoing efforts on all these fronts. If we' re to develop countermeasures that have lasting effects, new ideas that complement traditional ap-proaches will be needed.

New ideas are often based on the recognition of old truths. Pro-

karyotes (bacteria) ì inventedî anti-biotics billions of years ago, and resistance is primarily the result of bacterial adaptation to eons of antibiotic exposure. What are the fundamental implications of this reality? First, in addition to antibiotics' curative power, their use naturally selects for preexist-ing resistant populations of bac-teria in nature. Second, it is not just ì inappropriateî antibiotic use that selects for resistance. Rath-er, the speed with which resis-tance spreads is driven by micro-

The New England Journal of Medicine Downloaded from nejm.org at INSERM DISC DOC on January 8, 2014. For personal use only. No other uses without permission.

Copyright © 2013 Massachusetts Medical Society. All rights reserved.

PERSPECTIVE

n engl j med 368;4 nejm.org january 24, 2013300

bial exposure to all antibiotics, whether appropriately prescribed or not. Thus, even if all inappro-priate antibiotic use were elimi-nated, antibiotic-resistant infec-tions would still occur (albeit at lower frequency).

Third, after billions of years of evolution, microbes have most likely invented antibiotics against

every biochemical target that can be attacked ó and, of necessity, developed resistance mechanisms to protect all those biochemical targets. Indeed, widespread anti-biotic resistance was recently dis-covered among bacteria found in underground caves that had been geologically isolated from the sur-face of the planet for 4 million

years.2 Remarkably, resistance was found even to synthetic antibiot-ics that did not exist on earth until the 20th century. These re-sults underscore a critical reality: antibiotic resistance already exists, widely disseminated in nature, to drugs we have not yet invented.

Thus, from the microbial per-spective, all antibiotic targets are

The Future of Antibiotics and Resistance

New Interventions to Address the Antibiotic-Resistance Crisis.*

Intervention Status

Preventing infection and resistance

ì Self-cleaningî hospital rooms; automated disinfectant application through misting, vapor, radiation, etc.

Some commercially available but require clinical validation; more needed

Novel drug-delivery systems to replace IV catheters; regenerative-tissue tech-nology to replace prosthetics; superior, non invasive ventilation strategies

Basic science and conceptual stages

Improvement of population health and health care systems to reduce ad-missions to hospitals and skilled nursing facilities

Implementation research stage

Niche vaccines to prevent resistant bacterial infections Basic and clinical development stage

Refilling antibiotic pipeline by aligning economic and regulatory approaches

Government or nonprofit grants and contracts to defray up-front R&D costs and establish nonprofits to develop antibiotics

Models in place, expansion needed in number and scope; new nonprofit corporations needed

Institution of novel approval pathways (e.g., Limited Population Antibiotic Drug proposal)

Proposed, legislative and regulatory action needed

Preserving available antibiotics, slowing resistance

Public reporting of antibiotic-use data as a basis for benchmarking and re-imbursement

Policy action needed to develop and implement

Development of and reimbursement for rapid diagnostic and biomarker tests to enable appropriate use of antibiotics

Basic and applied research and policy action needed

Elimination of use of antibiotics to promote livestock growth Legislation proposed

New waste-treatment strategies; targeted chemical or biologic degradation of antibiotics in waste

One strategy approaching clinical trials

Studies to define shortest effective courses of antibiotics for infections Some trials completed

Developing microbe-attacking treatments with diminished potential to drive resistance

Preclinical, proof-of-principle stage

Immune-based therapies, such as infusion of monoclonal antibodies and white cells that kill microbes

Antibiotics or biologic agents that doní t kill bacteria but alter their ability to trigger inflammation or cause disease

Developing treatments attacking host targets rather than microbial targets to avoid selective pressure driving resistance

Preclinical, proof-of-principle stage

Direct moderation of host inflammation in response to infection (e.g., cyto-kine agonists or antagonists, PAMP receptor agonists)

Sequestration of host nutrients to prevent microbial access to nutrients

Probiotics that compete with microbial growth

* IV denotes intravenous, PAMP pathogen-associated molecular pattern, and R&D research and development.

The New England Journal of Medicine Downloaded from nejm.org at INSERM DISC DOC on January 8, 2014. For personal use only. No other uses without permission.

Copyright © 2013 Massachusetts Medical Society. All rights reserved.

PERSPECTIVE

n engl j med 368;4 nejm.org january 24, 2013300

bial exposure to all antibiotics, whether appropriately prescribed or not. Thus, even if all inappro-priate antibiotic use were elimi-nated, antibiotic-resistant infec-tions would still occur (albeit at lower frequency).

Third, after billions of years of evolution, microbes have most likely invented antibiotics against

every biochemical target that can be attacked ó and, of necessity, developed resistance mechanisms to protect all those biochemical targets. Indeed, widespread anti-biotic resistance was recently dis-covered among bacteria found in underground caves that had been geologically isolated from the sur-face of the planet for 4 million

years.2 Remarkably, resistance was found even to synthetic antibiot-ics that did not exist on earth until the 20th century. These re-sults underscore a critical reality: antibiotic resistance already exists, widely disseminated in nature, to drugs we have not yet invented.

Thus, from the microbial per-spective, all antibiotic targets are

The Future of Antibiotics and Resistance

New Interventions to Address the Antibiotic-Resistance Crisis.*

Intervention Status

Preventing infection and resistance

ì Self-cleaningî hospital rooms; automated disinfectant application through misting, vapor, radiation, etc.

Some commercially available but require clinical validation; more needed

Novel drug-delivery systems to replace IV catheters; regenerative-tissue tech-nology to replace prosthetics; superior, non invasive ventilation strategies

Basic science and conceptual stages

Improvement of population health and health care systems to reduce ad-missions to hospitals and skilled nursing facilities

Implementation research stage

Niche vaccines to prevent resistant bacterial infections Basic and clinical development stage

Refilling antibiotic pipeline by aligning economic and regulatory approaches

Government or nonprofit grants and contracts to defray up-front R&D costs and establish nonprofits to develop antibiotics

Models in place, expansion needed in number and scope; new nonprofit corporations needed

Institution of novel approval pathways (e.g., Limited Population Antibiotic Drug proposal)

Proposed, legislative and regulatory action needed

Preserving available antibiotics, slowing resistance

Public reporting of antibiotic-use data as a basis for benchmarking and re-imbursement

Policy action needed to develop and implement

Development of and reimbursement for rapid diagnostic and biomarker tests to enable appropriate use of antibiotics

Basic and applied research and policy action needed

Elimination of use of antibiotics to promote livestock growth Legislation proposed

New waste-treatment strategies; targeted chemical or biologic degradation of antibiotics in waste

One strategy approaching clinical trials

Studies to define shortest effective courses of antibiotics for infections Some trials completed

Developing microbe-attacking treatments with diminished potential to drive resistance

Preclinical, proof-of-principle stage

Immune-based therapies, such as infusion of monoclonal antibodies and white cells that kill microbes

Antibiotics or biologic agents that doní t kill bacteria but alter their ability to trigger inflammation or cause disease

Developing treatments attacking host targets rather than microbial targets to avoid selective pressure driving resistance

Preclinical, proof-of-principle stage

Direct moderation of host inflammation in response to infection (e.g., cyto-kine agonists or antagonists, PAMP receptor agonists)

Sequestration of host nutrients to prevent microbial access to nutrients

Probiotics that compete with microbial growth

* IV denotes intravenous, PAMP pathogen-associated molecular pattern, and R&D research and development.

The New England Journal of Medicine Downloaded from nejm.org at INSERM DISC DOC on January 8, 2014. For personal use only. No other uses without permission.

Copyright © 2013 Massachusetts Medical Society. All rights reserved.

Developing microbe-attacking treatments with diminished potential to driveresistance

Immune-based therapies, such as infusion of monoclonal antibodies and white cells that kill microbes

Antibiotics or biologic agents that doní t kill bacteria but alter their ability to trigger inflammation or cause disease

Page 15: Quel$futur$pour$l’antibiothérapie? · - Stable vis-à-vis des β-lactamases: BLSE, céphalosprinases déréprimées - Efficace in vitro sur 92% des entérobactéries BLSE + -Liaison

n engl j med 368;4 nejm.org january 24, 2013

PERSPECTIVE

299

tation, like many of the resource constraints that affect progress, is blamed on the long-standing U.S. economic embargo, but there may be other forces in the cen-tral government working against rapid, easy communication among Cubans and with the United States.

As a result of the strict eco-nomic embargo, Cuba has devel-oped its own pharmaceutical industry and now not only man-ufactures most of the medications in its basic pharmacopeia, but also fuels an export industry. Re-sources have been invested in de-veloping biotechnology expertise to become competitive with ad-vanced countries. There are Cuban academic medical journals in all the major specialties, and the med-ical leadership is strongly encour-aging research, publication, and stronger ties to medicine in other Latin American countries. Cuba' s medical faculties, of which there are now 22, remain steadily fo-cused on primary care, with fam-ily medicine required as the first

residency for all physicians, even though Cuba now has more than twice as many physicians per cap-ita as the United States.4 Many of those physicians work outside the country, volunteering for two or more years of service, for which they receive special compensation. In 2008, there were 37,000 Cuban health care providers working in 70 countries around the world.5 Most are in needy areas where their work is part of Cuban for-eign aid, but some are in more developed areas where their work brings financial benefit to the Cuban government (e.g., oil sub-sidies from Venezuela).

Any visitor can see that Cuba remains far from a developed country in basic infrastructure such as roads, housing, plumb-ing, and sanitation. Nonetheless, Cubans are beginning to face the same health problems the devel-oped world faces, with increas-ing rates of coronary disease and obesity and an aging population (11.7% of Cubans are now 65

years of age or older). Their un-usual health care system ad-dresses those problems in ways that grew out of Cuba' s peculiar political and economic history, but the system they have created ó with a physician for everyone, an early focus on prevention, and clear attention to community health ó may inform progress in other countries as well.

Disclosure forms provided by the authors are available with the full text of this article at NEJM.org.

1. Keck CW, Reed GA. The curious case of Cuba. Am J Public Health 2012;102(8):e13-e22.2. Drain PK, Barry M. Fifty years of U.S. em-bargo: Cubaí s health outcomes and lessons. Science 2010;328:572-3.3. World population prospects, 2011 revision. New York: United Nations (http://esa.un.org/ unpd/wpp/Excel-Data/mortality.htm).4. The world factbook. Washington, DC: Central Intelligence Agency, 2012 (https://www.cia.gov/library/publications/the-world- factbook).5. Gorry C. Cuban health cooperation turns 45. MEDICC Rev 2008;10:44-7.

DOI: 10.1056/NEJMp1215226Copyright © 2013 Massachusetts Medical Society.

A Different Model ó Medical Care in Cuba

The Future of Antibiotics and ResistanceBrad Spellberg, M.D., John G. Bartlett, M.D., and David N. Gilbert, M.D.

In its recent annual report on global risks, the World Eco-

nomic Forum (WEF) concluded that ì arguably the greatest risk . . . to human health comes in the form of antibiotic-resistant bacteria. We live in a bacterial world where we will never be able to stay ahead of the mutation curve. A test of our resilience is how far behind the curve we al-low ourselves to fall.î 1

Traditional practices in infec-tion control, antibiotic steward-ship, and new antibiotic develop-

ment are cornerstones of society' s approach to combating resistance and must be continued. But the WEF report underscores the facts that antibiotic resistance and the collapse of the antibiotic research-and-development pipeline continue to worsen despite our ongoing efforts on all these fronts. If we' re to develop countermeasures that have lasting effects, new ideas that complement traditional ap-proaches will be needed.

New ideas are often based on the recognition of old truths. Pro-

karyotes (bacteria) ì inventedî anti-biotics billions of years ago, and resistance is primarily the result of bacterial adaptation to eons of antibiotic exposure. What are the fundamental implications of this reality? First, in addition to antibiotics' curative power, their use naturally selects for preexist-ing resistant populations of bac-teria in nature. Second, it is not just ì inappropriateî antibiotic use that selects for resistance. Rath-er, the speed with which resis-tance spreads is driven by micro-

The New England Journal of Medicine Downloaded from nejm.org at INSERM DISC DOC on January 8, 2014. For personal use only. No other uses without permission.

Copyright © 2013 Massachusetts Medical Society. All rights reserved.

PERSPECTIVE

n engl j med 368;4 nejm.org january 24, 2013300

bial exposure to all antibiotics, whether appropriately prescribed or not. Thus, even if all inappro-priate antibiotic use were elimi-nated, antibiotic-resistant infec-tions would still occur (albeit at lower frequency).

Third, after billions of years of evolution, microbes have most likely invented antibiotics against

every biochemical target that can be attacked ó and, of necessity, developed resistance mechanisms to protect all those biochemical targets. Indeed, widespread anti-biotic resistance was recently dis-covered among bacteria found in underground caves that had been geologically isolated from the sur-face of the planet for 4 million

years.2 Remarkably, resistance was found even to synthetic antibiot-ics that did not exist on earth until the 20th century. These re-sults underscore a critical reality: antibiotic resistance already exists, widely disseminated in nature, to drugs we have not yet invented.

Thus, from the microbial per-spective, all antibiotic targets are

The Future of Antibiotics and Resistance

New Interventions to Address the Antibiotic-Resistance Crisis.*

Intervention Status

Preventing infection and resistance

ì Self-cleaningî hospital rooms; automated disinfectant application through misting, vapor, radiation, etc.

Some commercially available but require clinical validation; more needed

Novel drug-delivery systems to replace IV catheters; regenerative-tissue tech-nology to replace prosthetics; superior, non invasive ventilation strategies

Basic science and conceptual stages

Improvement of population health and health care systems to reduce ad-missions to hospitals and skilled nursing facilities

Implementation research stage

Niche vaccines to prevent resistant bacterial infections Basic and clinical development stage

Refilling antibiotic pipeline by aligning economic and regulatory approaches

Government or nonprofit grants and contracts to defray up-front R&D costs and establish nonprofits to develop antibiotics

Models in place, expansion needed in number and scope; new nonprofit corporations needed

Institution of novel approval pathways (e.g., Limited Population Antibiotic Drug proposal)

Proposed, legislative and regulatory action needed

Preserving available antibiotics, slowing resistance

Public reporting of antibiotic-use data as a basis for benchmarking and re-imbursement

Policy action needed to develop and implement

Development of and reimbursement for rapid diagnostic and biomarker tests to enable appropriate use of antibiotics

Basic and applied research and policy action needed

Elimination of use of antibiotics to promote livestock growth Legislation proposed

New waste-treatment strategies; targeted chemical or biologic degradation of antibiotics in waste

One strategy approaching clinical trials

Studies to define shortest effective courses of antibiotics for infections Some trials completed

Developing microbe-attacking treatments with diminished potential to drive resistance

Preclinical, proof-of-principle stage

Immune-based therapies, such as infusion of monoclonal antibodies and white cells that kill microbes

Antibiotics or biologic agents that doní t kill bacteria but alter their ability to trigger inflammation or cause disease

Developing treatments attacking host targets rather than microbial targets to avoid selective pressure driving resistance

Preclinical, proof-of-principle stage

Direct moderation of host inflammation in response to infection (e.g., cyto-kine agonists or antagonists, PAMP receptor agonists)

Sequestration of host nutrients to prevent microbial access to nutrients

Probiotics that compete with microbial growth

* IV denotes intravenous, PAMP pathogen-associated molecular pattern, and R&D research and development.

The New England Journal of Medicine Downloaded from nejm.org at INSERM DISC DOC on January 8, 2014. For personal use only. No other uses without permission.

Copyright © 2013 Massachusetts Medical Society. All rights reserved.

PERSPECTIVE

n engl j med 368;4 nejm.org january 24, 2013300

bial exposure to all antibiotics, whether appropriately prescribed or not. Thus, even if all inappro-priate antibiotic use were elimi-nated, antibiotic-resistant infec-tions would still occur (albeit at lower frequency).

Third, after billions of years of evolution, microbes have most likely invented antibiotics against

every biochemical target that can be attacked ó and, of necessity, developed resistance mechanisms to protect all those biochemical targets. Indeed, widespread anti-biotic resistance was recently dis-covered among bacteria found in underground caves that had been geologically isolated from the sur-face of the planet for 4 million

years.2 Remarkably, resistance was found even to synthetic antibiot-ics that did not exist on earth until the 20th century. These re-sults underscore a critical reality: antibiotic resistance already exists, widely disseminated in nature, to drugs we have not yet invented.

Thus, from the microbial per-spective, all antibiotic targets are

The Future of Antibiotics and Resistance

New Interventions to Address the Antibiotic-Resistance Crisis.*

Intervention Status

Preventing infection and resistance

ì Self-cleaningî hospital rooms; automated disinfectant application through misting, vapor, radiation, etc.

Some commercially available but require clinical validation; more needed

Novel drug-delivery systems to replace IV catheters; regenerative-tissue tech-nology to replace prosthetics; superior, non invasive ventilation strategies

Basic science and conceptual stages

Improvement of population health and health care systems to reduce ad-missions to hospitals and skilled nursing facilities

Implementation research stage

Niche vaccines to prevent resistant bacterial infections Basic and clinical development stage

Refilling antibiotic pipeline by aligning economic and regulatory approaches

Government or nonprofit grants and contracts to defray up-front R&D costs and establish nonprofits to develop antibiotics

Models in place, expansion needed in number and scope; new nonprofit corporations needed

Institution of novel approval pathways (e.g., Limited Population Antibiotic Drug proposal)

Proposed, legislative and regulatory action needed

Preserving available antibiotics, slowing resistance

Public reporting of antibiotic-use data as a basis for benchmarking and re-imbursement

Policy action needed to develop and implement

Development of and reimbursement for rapid diagnostic and biomarker tests to enable appropriate use of antibiotics

Basic and applied research and policy action needed

Elimination of use of antibiotics to promote livestock growth Legislation proposed

New waste-treatment strategies; targeted chemical or biologic degradation of antibiotics in waste

One strategy approaching clinical trials

Studies to define shortest effective courses of antibiotics for infections Some trials completed

Developing microbe-attacking treatments with diminished potential to drive resistance

Preclinical, proof-of-principle stage

Immune-based therapies, such as infusion of monoclonal antibodies and white cells that kill microbes

Antibiotics or biologic agents that doní t kill bacteria but alter their ability to trigger inflammation or cause disease

Developing treatments attacking host targets rather than microbial targets to avoid selective pressure driving resistance

Preclinical, proof-of-principle stage

Direct moderation of host inflammation in response to infection (e.g., cyto-kine agonists or antagonists, PAMP receptor agonists)

Sequestration of host nutrients to prevent microbial access to nutrients

Probiotics that compete with microbial growth

* IV denotes intravenous, PAMP pathogen-associated molecular pattern, and R&D research and development.

The New England Journal of Medicine Downloaded from nejm.org at INSERM DISC DOC on January 8, 2014. For personal use only. No other uses without permission.

Copyright © 2013 Massachusetts Medical Society. All rights reserved.

Developing treatments attacking host targets rather than microbial targetsto avoid selective pressure driving resistance

Direct moderation of host inflammation in response to infection (e.g., cyto-kine agonists or antagonists, PAMP receptor agonists)

Sequestration of host nutrients to prevent microbial access to nutrients

Probiotics that compete with microbial growth

Page 16: Quel$futur$pour$l’antibiothérapie? · - Stable vis-à-vis des β-lactamases: BLSE, céphalosprinases déréprimées - Efficace in vitro sur 92% des entérobactéries BLSE + -Liaison

Z[6'WXYi

Bactériophages = virus qui parasitent les bactéries => usage thérapeutique! Peptidoglycane hydrolase

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Principes  de  la  phagothérapie  (1)

ü Spécificité d’actionoSpectre très étroit (lysotype)

• nécessité de tester activité sur la souche visée• impact très limité sur les flores

oTolérance supposée excellente (aucune action sur cellules mammifères)

ü Agent biologique vivantoSimplifie le choix des doses et des duréesoMais complique beaucoup:

• la partie ‘règlementaire’• la production et la conservation

Kutaledadze M et al. Trends Biotechnology 2010

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28#<P#9/D$C/$5"$9>"T:7>?8"9#/$U%V

! Sélectionner phages avec cycle lytique exclusif

! Mettre en place un test prédictif d’efficacitéo isolement du pathogène pour screening de phages candidats…oou ‘cocktail’ de phages

Deresinski S et al. Clin Infect Dis 2009

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Applications  chez  l’Homme  en  2014  (1)

ü Usage topique +++oOtite chronique à P. aeruginosa (randomisée, double aveugle, 24 patients)

• Cocktail de 6 phages, 24 patients• Efficacité clinique et microbio• Tolérance parfaite et disparition des phages au décours

oTraitement ulcères de jambe (randomisée, double aveugle, 40 patients)• Cocktail phages anti P. aeruginosa, E. coli & S. aureus

Prévention diarrhées bactérienneso Industrie alimentaire (décontamination)

• ListShield, EcoShield, SalmoFresh = autorisation FDA

oVibriophages pour mettre fin aux épidémies de choléra (en cours)

Knoll BM et al. Clin Infect Dis 2014

Page 20: Quel$futur$pour$l’antibiothérapie? · - Stable vis-à-vis des β-lactamases: BLSE, céphalosprinases déréprimées - Efficace in vitro sur 92% des entérobactéries BLSE + -Liaison

Applications  chez  l’Homme  en  2014  (2)

ü Traitement des diarrhées bactériennesoPlusieurs essais cliniques avec T4 phages (anti E. coli)

oEpidémie SHU Allemagne 2011: Sélection + caractérisation génétique de

phages candidats actifs sur Shiga toxin-producing E. coli O104:H4 (STEC) en72 h Merabishvili M et al. PLoS One 2012

ü BiofilmsoPrévention colonisation sondes urinaires à P. aeruginosa

• Monophages => sélection résistances en 24 h…• Cocktails phages ou combinaison phage + ATB => efficacité microbio

oTraitement infections osseuses sur matériel (modèle rat)• Phage + teicoplanine = synergie sur SARM

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JID  2010

-­‐ Pneumonie  exp à  Pyo  107   intra-­‐nasal  puis  instillation  de  bacteriophages :    survie  +++

-­‐ Et  effet  preventif de  l’infection  si  Ttr par  phages,  24h  avant  l’infection    

Page 22: Quel$futur$pour$l’antibiothérapie? · - Stable vis-à-vis des β-lactamases: BLSE, céphalosprinases déréprimées - Efficace in vitro sur 92% des entérobactéries BLSE + -Liaison

B"P7?8#:P#</D

! Petits peptides antimicrobiens produits par des bactérieso Tolérance excellente par voie orale (produits de fermentation dans aliments)o Actifs préférentiellement sur bactéries Gram positifo Spectre variableo Manipulation génétique simple

! Deux principaux modes d’actiono Membrane bactérienneo Répression de gènes et de synthèse protéique

Cotter PD et al. Nature Rev Microbiol 2013

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Bactériocines:  Modes  d’action

Page 24: Quel$futur$pour$l’antibiothérapie? · - Stable vis-à-vis des β-lactamases: BLSE, céphalosprinases déréprimées - Efficace in vitro sur 92% des entérobactéries BLSE + -Liaison

Thuricine  CD

ü Bactériocine de classe I

ü 2 peptides synthétisés par Bacillus thuringiensis

ü Efficacité comparable à métronidazole sur Clostridium difficile

ü Pas d’impact sur la floreintestinale

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ABP118

Bactériocine de classe IIB

ü Peptide synthétisé par Lactobacillus salivarius

ü Prévient la listériose dans un modèle expérimental murin

Cotter PD et al. Nature Rev Microbiol 2013

Page 26: Quel$futur$pour$l’antibiothérapie? · - Stable vis-à-vis des β-lactamases: BLSE, céphalosprinases déréprimées - Efficace in vitro sur 92% des entérobactéries BLSE + -Liaison

Oligonucléotides  anti-­‐sens:  les  principes

ü Extinction gène(s) délétère(s) par appariement spécifique

ü Forte spécificité

ü Synthèse relativement simple

ü Mais difficultés pour la diffusion à travers la paroi bactérienne…

ü Potentiel thérapeutique fort quand ce souci sera résolu ?

Kole R et al. Nature Rev 2012

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Traitement  curatif  des  infections  par  immunoglobulines

ü Multiples usages théoriques / efficacité selon modèlesanimaux

ü Aucune indication validée …

ü Principaux écueilso Coûtso Maladies rares => pas d’essai randomisé de taille suffisanteo Intervention nécessairement précoce, voire préventiveo Combinée à d’autres interventions (ATB)

Ferrara G et al. Am J Med 2012

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Action  anti-­‐toxinique des  IgIV polyvalentes

ü Action anti-PVL démontrée

Gauduchon V et al. J Infect Dis 2004

ü Effet spectaculaire dans le modèle de pneumopathie du lapin à SARM communautaire PVL+

Duong et al. ICAAC 2012

ü Toxines super-antigèniqueso Chocs toxiniques strepto- et

staphylococciqueso Syndrome de Kawasaki

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Anticorps  monoclonaux

ü Ac anti-toxines A et B en prévention des rechutes de colites à Clostridium difficileaprès guérison par vancomycine

Lowy F et al. N Engl J Med 2010

ü Ac bi-spécifique en prévention des infections sévères à P. aeruginosa

üAc anti-hémolysine alpha enprévention/traitement des infections sévères à S. aureus

ND4BB, Combacte 2014

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Traitements  anti-­‐virulence  (1)

→  Cibler  la  virulence  au  lieu  de  la  croissance  peut  potentiellement   diminuer   la  résistance  ...→Inhibiteurs  du  « Quorum   – Sensing »:

(Plos One,  Aout  2014)

(CCM,   2009)

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Traitements  anti-­‐virulence  (2)

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Traitements  anti-­‐virulence  (3)→  Cibler  la  virulence  au  lieu  de  la  croissance  peut  potentiellement   diminuer   la  résistance  ...→Autres  possibles   facteurs  de  virulence  cible  de  P.aeruginosa:

(Plos One,  Aout  2014)

(CCM,   2009)

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«Drug  repurposing for  antibacterial or  anti-­‐virulent  effects » Front  Microbiol,  April  2015

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«Drug  repurposing for  antibacterial or  anti-­‐virulent  effects »

►Towards repositioning niclosamide for  anti-­‐virulence  therapy of  Pseudomonas  aeruginosa lung infections:  development of  inhalable  formulations  throughnanosuspensiontechnology.  (Mol  Pharm 2015,  May  14)

Front  Microbiol,   April  2015

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La  médecine  « naturelle »

ü Transplantation fécale pour colite à Clostridium difficileréfractaire et/ou sévère => Révolutionnaire !

van Nood E et al. N Engl J Med 2013

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a"$.?C/P#</$<"748/55/

! Asticothérapie (Maggot)o Ambroise Paré, 1557, etc…o des essais randomisés ! o disponibilité ATU depuis 2006 en France

Bourlioux P et al. Annales Pharmaceutiques Françaises 2013

!Apithérapie (miel)o pas celui du commerce (irradiation préalable pour destruction pathogènes)o effet antibactérieno raccourcit la cicatrisation des brûlures

Cochrane database Syst Review 2008

! Sérothérapie (sérum équin)o indiquée pour diphtérie, botulisme, tétanos en 2014

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« Biospleen »...

Nature  Medicine,   sept  2014

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Nature  Medicine,   sept  2014

Capture  efficiency in  vitro Epuration  sanguine  E.coli in  vitro Epuration  sanguine  E.coli in  vivoModèle  de  bactériémie  rat

Modèle  de  bactériémie  E.coli rat Modèle  de  choc  endotoxinique   LPS  rat

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Conclusions-­‐ Les  antibiotiques  ne  sont  pas  « en  voie  de  disparition »...même  moins  nombreux

-­‐ Le  développement   de  nouveaux  antibiotiques  est  toujours  « poussé »  par  la  diffusion  de  

nouveaux  mécanismes  de  résistance

-­‐ L’augmentation  des  résistances  est  inéluctable  car  une  nécessité  pour  la  survie  bactérienne...  

et  nous  vivons  dans  un  monde  bactérien  « protecteur »

-­‐ Les  antibiotiques  sont  qqle part  une  idée  réductrice  et  à  « double  effet »  ...  

-­‐ Il  faut  changer  les  concepts  !  

-­‐ Trouver  de  nouvelles  cibles  thérapeutiques  pour  ne  pas  « tuer »    les  bactéries

-­‐ Il  n’y  a  pas  de  bactéries  « pathogènes  ou  non  – pathogènes »

-­‐ Il  faut  repenser  l’infection  dans  une    approche  complexe  de  l’interaction  hôte  (immunité  innée  

et  acquise)-­‐pathogène(« facteurs  de  virulence »)

-­‐ Il  faut  apprendre  à  « moduler »  cette  relation  hôte-­‐pathogène  en  jouant  « à  la  fois  et  selon »  

sur  des  facteurs  hôte  et/ou  bactérie  en  préventif  et  en  curatif  

-­‐ La  montée  en  puissance  de  la  génomique  et  des  nano  et  biotechnologies vont  nous  aider  dans  

cette  nouvelle  approche