UNITE DE RECHERCHE - medecine.univ-amu.fr · THEMATIQUE : interactions hôte-pathogènes durant la...

Unité de Recherche.sur les Maladies Infectieuses Tropicales Emergentes (URMITE) Mise à jour : janvier 2015

1/30

UNITÉ DE RECHERCHE

UMR 7278 Unité de Recherche sur les Maladies Infectieuses Tropicales

Emergentes (URMITE)

DIRECTEUR : RAOULT Didier

ADRESSE : Faculté de Médecine Site Timone TELEPHONE : 04 91 32 43 75/04 91 32 44 80 COURRIEL : [email protected]

SITE WEB : www.mediterranee-infection.com

ECOLE DOCTORALE : Sciences de la Vie et de la Santé (ED 062) RATTACHEMENTS : AMU (UM63) CNRS (UMR7278) IRD (198) INSERM (U1095) IRBA (Marseille) AP-HM (Pôle 8)

POLES HOSPITALIERS : 2 – Gynépôle Marseille (Intersites) 4 – Réa-Urgences (Nord) 8 - Maladies Infectieuses (Intersites)

10 – Urologie Néphrologie (Conception) 13 – Pédiatrie Médico-Chirurgicale (Intersites)

16 – Cardio-Vasculaire-Thoracique (Intersites) 18 – Biologie (Intersites) 28 – DACCORD (Intersites) DISCIPLINES D’APPARTENANCES : DS 5 - Biologie,médecine, santé SPECIALITÉS : Maladies Infectieuses

GESTIONNAIRES UNITÉ : VERIN Francine (CNRS), CORONA Cathy, COMBE Isabelle (AMU), NADARADJANE Sacy (IRD)

http://www.mediterranee-infection.com/


2/30

EFFECTIFS

Enseignants-Chercheurs : 38

Chercheurs EPST : 11

Autres Enseignants-Chercheurs et Chercheurs : 1 BIATSS/ITA : 41 Doctorants 85

PERSONNELS IMPLIQUÉS DANS LA RECHERCHE

Téléphone UM63 MARSEILLE: 04 91 32 43 75 Téléphone IRBA MARSEILLE: 04 91 15 01 24

Téléphone IRD DAKAR : +221338493580

ABAT Cédric Doctorant ABEILLE Annick TCH ABOUBAKER OSMAN Djaltou Doctorant ABOUDHARAM Gérard PU

AGHNATIOS Rita Doctorant

AHERFI Sarah Doctorant

AL BAYSSARI Charbel Doctorant

ALMERAS Lionel CR DRSSA Toulon

AMPHOUX Bernard TCH

ANDRIEU Véronique PU

ANGELAKIS Emmanouil PRAC

ARMOUGOM Fabrice IR

ARMSTRONG Nicholas IE

ASMAR Shady Doctorant

AUDOLY Gilles IR INSERM

AZAROUC Fayza TCH

AZZA Said IGR

BA El Hadji Konko Ciré IE

BA El Hadji KC Doctorant

BACHAR Dipankar IE CNRS

BADIAGA Sékéné PH

BAJRAI Leena Doctorant BAPTISTE Emeline ING CDD

BARDET Lucie Doctorant BARRACCO Priscilla Adjoint Administratif Hosp.

BARRASSI Lina TCH

BASCO Leonardo DR


3/30

BASSENE Hubert IR

BAUDOIN Jean-Pierre ING CDD

BECHAH Yassina IR INSERM

BEDOTTO Marielle IE

BEKLIZ Meriem Doctorant

BELHARETH Rym Doctorant BEN AMARA Amira IGE

BENAKHLA Hmed PU

BENAMAR Samia Doctorant BENYACOUB Slim PU

BERENGER Jean-Michel TCH

BERLAND Yvon PU-PH

BEYE Mamadou Doctorant BITAM Idir PU (HDR)

BITTAR Fadi MCF

BLANC-TAILLEUR Caroline IGE CDD

BOGREAU Hervé CR contractuel IRBA

BORG Audrey TCH

BOU KHALIL Jacques Doctorant

BOUDJEMA Sophia Doctorant BOUGANALI Charles TCH

BOUZID Feriel Doctorant BREGEON Fabienne MCF

BRETELLE Florence MCF

BRIOLANT Sébastien CR contractuel IRBA

BROSSARD Catherine TCH

BROUQUI Philippe PU-PH

BUFFAT Christophe MCF

BUFFET Sylvain IE

BZDRENGA Janek Doctorant CAL Céline TCH

CAMOIN Laurence MCU-PH

CANTIE Cécilia Doctorant CAPUTO Aurélia IE CDD

CAPUTO Aurélia Doctorant CARUSO Gilbert TSH

CASALTA Jean-Paul PH

CASSIR Nadim Doctorant CHABRIERE Eric PU

CHAUVANCY Gilles AI CHEVALIER Morgane TCH

CIMMINO Teresa Doctorant COLLIN Juline TCH

COLSON Philippe PHU

COMBE Isabelle IGE

CORONA Cathy AJDT

COSTAGLIOLA Olivier TCH

CROCE Olivier IR CNRS


4/30

DAHMANI Mustapha Doctorant

D'AMATO Felicetta Doctorant

DAVOUST Bernard CR DRSSA Toulon

DECLOQUEMENT Philippe IE

DELAUNAY Valérie CR1

DELERCE Jeremy ING CDD

DESNUES Christelle CR CNRS

DI PINTO Fabrizio ING CDD

DIAGNE Nafissatou IE

DIALLO Aldiouma IR Médecin

DIATTA Georges IR

DIEDHIOU Seynabou Mocotte Doctorant

DIEME Constentin Doctorant DIEYE EP BA Fambaye TCH

DIONE Niokhor Doctorant DIOUF Papa Niokhor TCH

D'JOURNO Benoît PHU

DODDOLI Christophe PHU

DOMINGO Ivana Adjoint Administratif Hosp.

DOUCOURE Souleymane IE

DOUDON Emilie TCH

DRANCOURT Michel PU-PH

DRAY Sandrine Doctorant

DRISSI Fatima Doctorant DUBOURG Grégory PHU

DUBOURG Grégory Doctorant

DUCLOS Nathalie TCH

DULAC Magalie TCH

EDOUARD Sophie AHU

EHOUNOUD Bile Cyrille Herve Doctorant EL KARKOURI Khalid IGR

ELDIN Carole Doctorant ESTEL Michelle TCH

FALL Bassirou TCH

FAYE Alassane ADT

FAYE Alassane ADT

FENOLLAR Florence PU-PH

FERNANDEZ Marion Adjoint Administratif Hosp.

FEUERSTEIN Jean-Marc TCH

FILOSA Valérie Adjoint Administratif Hosp.

FILOSA Véronique Cadre de santé médico-technique

FLAUDROPS Christophe IE

FOREL Jean-Marie PH

FORESTIER Claire Lise CR INSERM (HDR)

FOTSO- FOTSO Aurélien Doctorant

FOURNIER Pierre-Edouard PU-PH

GAMBARELLI Laure Cadre administratif


5/30

GAUTRET Philippe PH

GHAOUI Hichem Doctorant

GHIGO Eric CR CNRS (HDR)

GOMEZ Carine Doctorant GORRETA Rose Agent d'entretien

GOTTRAU Anne-Marie Agent d'entretien

GOURIET Frédérique MCU/PH

GRIMALDIER Clio TCH

GRISOLI Dominique Doctorant GROS Thomas TCH

GUILHOT Elodie Doctorant

HABIB Gilbert PU-PH

HAMAD Ibrahim Doctorant

HEINEMANN Mellie Doctorant

HRAIECH Sami Doctorant

HUART Michael Doctorant

HUYNH Thi Thuy Doctorant

IKANGA RETENO Dorine Doctorant

JACQUET Pauline Doctorant JARDOT Priscilla TCH

JNEID Joanne Doctorant JUNOY Stéphanie TCH

KA Mignane Biram Doctorant KEITA Alpha TCH

KESHRI VIVEK Doctorant

KESTEMAN Thomas Doctorant

KODJOVI DODJI Mlaga Doctorant

KOWALCZEWSKA Malgo IGE

LA SCOLA Bernard PU-PH

LABAS Noémie TCH CDD

LAFRI Ismail Doctorant LAGIER Jean-Christophe AHU

LAJAUNIE Claire IE INSERM

LAURENT Jonathan TCH

LE PAGE Stéphanie Doctorant

LEANGAPICHART Thongpan Doctorant LEBIDEAU Marion TCH

LEFFAD Maya AI

LEONE Marc PU-PH

LEPIDI Hubert PU-PH

LEPOLARD Catherine TCH

LEULMI Hamza Doctorant LEVASSEUR Antony PU

LEVY Pierre-Yves PH

LIOTAUD Gilles TCH

LO CHEICKH Doctorant LONGINOTTI Sandrine Adjoint Administratif Hosp. LOUKHNEVA CUSACK Olga Adjoint Administratif Hosp.

MACE Helène Doctorant


6/30

MALEK Maliya Doctorant MANE Youssouph TCH

MARIE Jean-Lou CR DRSSA Toulon

MATHLOUTHI Najla Doctorante MATI Marie-Charlotte TCH

MEDIANNIKOV Oleg CR2

MEGE Jean-Louis PU-PH

MERHEJ Vicky MCF

MILITELLO Muriel TCH CDD

MILLION Matthieu AHU

MOAL Valérie PH

MOUFFOK Nadjet PU CHU Oran

MOUREMBOU Gaël Doctorant NAPPEZ Claude IGE

NDIAYE Oussmane TCH

NDIAYE Tofène TCH

NDIAYE Emilie TCH

NDIAYE Timague TCH

NDIAYE Prosper TCH

NEBBAK Amira Doctorant

N'GUYEN Thi Thien TCH

NIANG Oumar TCH

NIARE Sirama Doctorant

NKAMGA Vanessa Demonfort Doctorant

OKDAH Liliane Doctorant

OLAITAN Abiola Doctorant

ORLANDO-PRADINES Eve CR DRSSA

OUANEZAR Abdelkrim Adjoint Administratif Hosp.

PAGES Frederic CR DRSSA

PAGNIER Isabelle PU-PH (HDR)

PAPAZIAN Laurent PU-PH

PAROLA Philippe PU-PH (HDR)

PATRICE Jean-Yves TCH

PERREAL Céline TCH

PINAULT Lucile ING CDD

PINOS Sandrine Doctorant PITACCOLO Micheline Adm.

PRUDENT Elsa ING CDD

PRUDENT Elsa Doctorant

RANANAWARE Dimple Paul Doctorant RAOULT Didier PU-PH (HDR)

RASCOVAN Nicolas IGR

RAYMOND Pascale TCH

REYNAUD-GAUBERT Martine PU-PH (HDR)

REYNIER Pauline IGE

RICHET Hervé PAC

RICHEZ MAGALI TCH

ROBERT Catherine IGR


7/30

ROCH Antoine PAC

RODRIGUEZ Julie TCH

ROLAIN Jean-Marc PU-PH

SAMBOU Masse Doctorant

SANGARE Abdoul Karim Doctorant

SECK EL Hadji Doctorant SENG Piseth PRAC

SENGHOR Bruno Doctorant SENGHOR Paul TCH

SIMON Fabrice PH

SOKHNA Cheikh CR1

SOTO ALADRO Alberto IGE

SOUGOUFARA Seynabou Doctorant

SOURRABH Jain Doctorant

SOW Mouhamadou Baba IE

SRIDHAR Shruti Doctorant

STEIN Andreas PU-PH

SYLLA Elhadji D TCH

SYLLA Seydou Nourou Doctorant

TAHIR Djamel Doctorant

TANDINA Fatalmoudou Doctorant

TEMMAM Sarah Doctorant TERRAS Jérôme AI

THOMAS Pascal-Alexandre PU-PH

THOMAS Laurence TCH

THUNY Franck PU-PH

TIAN BI DIANGONE Roger Doctorant

TIDJANI ALOU Maryam Doctorant

TOROSSIAN Danielle Agent d'entretien

TORRE Cédric Doctorant TOUATI Caroline Adjoint Administratif Hosp.

TOURE Malick TCH

TRAORE Sory Ibrahima Doctorant TROUPLIN Virginie IR CNRS

TUSA Marie Adjoint Administratif Hosp.

VALLES Camille ASI

VERIN Francine TCH CNRS

VERNEAU Jonathan Doctorant VIAL Emeline TCH

VIALATTE Marie Christine Doctorant

VIKAS Sharma Doctorant WEBER Pascal IE CNRS

WOTODJO Amélé Doctorant WURTZ Nathalie IGE

ZINGUE Dezemon Doctorant


8/30

PERSONNELS AVEC HDR

ABOUDHARAM Gérard MCF

ALMERAS Lionel Chercheur contractuel IRBA

BADIAGA Sékéné PH

BASCO Leonardo DR IRD

BENYACOUB Slim PU Université d'Annaba

BERLAND Yvon PU-PH

BITAM Idir Maître de Recherche à l'Institut Pasteur d'Alger

BREGEON Fabienne MCU-PH

BRETELLE Florence PU-PH

BROUQUI Philippe PU-PH

D’JOURNO Xavier PHU

DODDOLI Christophe PU-PH

DRANCOURT Michel PU-PH

DUBUS Jean-Christophe PU-PH

FENOLLAR Florence MCU-PH

FOURNIER Pierre-Edouard PU-PH

GAUTRET Philippe PH

GHIGO Eric CR CNRS

HABIB Gilbert PU-PH

LA SCOLA Bernard PU-PH

LEONE Marc PU-PH

LEPIDI Hubert PU-PH

MEGE Jean-Louis PU-PH

MOTTOLA Giovanna MCU (Univ Naples) (HDR)

MOUFFOK Nadjet PU CHU Oran

PAPAZIAN Laurent PU-PH

PAROLA Philippe PU-PH

POUVELLE Bruno IGR

PRADINES Bruno Chercheur IRBA

RAOULT Didier PU-PH

REYNAUD-GAUBERT Martine PU-PH

ROCH Antoine PU-PH


SIMON Fabrice PU HIA

STEIN Andreas PU-PH

THOMAS Pascal-Alexandre PU-PH

THUNY Franck PHU

EQUIPES DE RECHERCHE et THEMATIQUES EQUIPE : E1 - Unité des Rickettsies et des pathogènes émergents RESPONSABLE : RAOULT Didier THEMATIQUE : Découverte des pathogènes émergents. Génomique des rickettsies. Post-génomique. Maladie de Wipple

EQUIPE : E2 - Tools for the detection, identification and characterisation of emerging pathogens RESPONSABLE : DRANCOURT Michel THEMATIQUE : Microbiogénomique. Paléomicrobiologie


9/30

EQUIPE : E3 - Infections, gender et pregnancy RESPONSABLE : GHIGO Eric et MEGE Jean-Louis

THEMATIQUE : Etude ex vivo des réponses immunes innées et adaptatives. Etude du trafic intracellulaire. Approche intégrée via des modèles animaux spécifiques

EQUIPE : E4 - Microorganismes de l'environnement, pneumonies et bioterrorisme RESPONSABLE : LA SCOLA Bernard THEMATIQUE : Nouveaux agents pathogènes de l'eau et étude de la viabilité des microorganisme dans l'eau. Analyse du transcriptome de Mimivirus. Détection, typage et analyse de la virulence des agents de bioterrorisme, (Coxiella burnetii, Rickettsia sp. Et Francisella

EQUIPE : E5 - Veille et Approche Entomologique des Maladies Vectorisées Emergentes RESPONSABLE : PAROLA Philippe THEMATIQUE : Veille et prise en charge des maladies infectieuses émergentes vectorisées. Veille sur les microorganismes associés aux anthropodes

EQUIPE : E6 - Mucoviscidoses, microbiote et prise en charge thérapeutique RESPONSABLE : ROLAIN Jean-Marc

THEMATIQUE : Evaluation de la sensibilité et de la résistance aux agents anti-infectieux. Détection d'agents infectieux émergents et/ou multi-résistants chez les patients atteints de mucoviscidose

EQUIPE : E7 - Infections respiratoires sévères émergentes et leur prise en charge RESPONSABLE : PAPAZIAN Laurent THEMATIQUE : Identification de nouveaux agents de pneumonies. Modèle expérimental de pneumonie ; pharmacologie-interactions avec la ventilation mécanique. Optimisation de la prise en

charge des infections respiratoires

EQUIPE : E8 - Maladies tropicales émergentes RESPONSABLE : PRADINES Bruno THEMATIQUE : Surveillance et émergence des résistances aux antipaludiques. Développement de

nouveaux médicaments antipaludiques. Amélioration des techniques diagnostiques du paludisme - Contact homme-moustique. Plasmodium vivax

EQUIPE : E9 - Equipe émergente : Microbiogénomique RESPONSABLE : FOURNIER Pierre-Edouard THEMATIQUE : Génomique bactérienne. Génomique comparative. Evolution. Application diagnostiques

EQUIPE : E10 - Equipe émergente PathoVirome RESPONSABLE : DESNUES Christelle THEMATIQUE : Métagénomique. Ecologie virale. Biodiversité. Pathologies

EQUIPE : E11 - Maladies infectieuses persistantes et émergentes en Afrique de l'Ouest : détection, épidémiologique et lutte RESPONSABLE : THEMATIQUE : Paludisme. Biodiversité des pathogènes émergents

EQUIPE : E12 - Maladies bactériennes vectorisées au Maghreb RESPONSABLE : BITAM Idir

THEMATIQUE : Surveillances entomologiques et mammalogiques des agents pathogènes. Détections moléculaires et isolements des agents pathogènes vectorisés. Inventaire des bactéries vectorisées par les puces et les tiques en Maghreb

EQUIPE : E13 - Bio cristallographie, biotechnologie et enzymologie structurale RESPONSABLE : CHABRIERE Eric THEMATIQUE : Diagnostic Clinique (identification de bactéries et organismes, dosage d’antibiotiques et développement de méthodes (biotypage, protéomique, chromatographie) EQUIPE : E14 - Molecular Parasitology and signaling RESPONSABLE : FORESTIER Claire

THEMATIQUE : interactions hôte-pathogènes durant la leishmaniose visecérale.


10/30

EQUIPE: E15 – Genome-wide reconstruction of the evolution of the immune system in vertebrates RESPONSABLE :ABI-RACHED Laurent

THEMATIQUE : Etude des bases génétiques de la maladie de Whipple, analyse génétique des planaires, analyse génétique des DING et étude comparative des génomes de Borrelia

PERSONNELS PAR EQUIPE DE RECHERCHE EQUIPE : E1 - Unité des Rickettsies et des pathogènes émergents RESPONSABLE : RAOULT Didier THEMATIQUE : Découverte des pathogènes émergents. Génomique des rickettsies. Post-génomique. Maladie de Wipple

ANGELAKIS Emmanouil ITER ARMOUGOM Fabrice IR IRD BITTAR Fadi MCF CASALTA Jean-Paul PH

DAVOUST Bernard Chercheur DRSSA Toulon

EDOUARD Sophie AHU FENOLLAR Florence MCU-PH HABIB Gilbert PU-PH LAGIER Jean-Christophe AHU LEVY Pierre-Yves PH MARIE Jean-Lou Chercheur DRSSA Toulon

MERHEJ Vicky MCF MILLION Matthieu AHU RAOULT Didier PU-PH THUNY Franck PHU EQUIPE : E2 - Tools for the detection, identification and characterisation of emerging pathogens

RESPONSABLE : DRANCOURT Michel THEMATIQUE : Microbiogénomique. Paléomicrobiologie

ABOUDHARAM Gérard MCF DRANCOURT Michel PU-PH

EQUIPE : E3 - Infections, gender et pregnancy RESPONSABLE : GHIGO Eric et MEGE Jean-Louis THEMATIQUE : Etude ex vivo des réponses immunes innées et adaptatives. Etude du trafic intracellulaire. Approche intégrée via des modèles animaux spécifiques BEN AMARA Amira IGE AMU

BRETELLE Florence PU-PH (HDR) BUFFAT Christophe MCU-PH CAPO Christian CR INSERM (HDR) GHIGO Eric CR CNRS (HDR) LEONE Marc PU-PH (HDR) LEPOLARD Catherine ASI AMU MEGE Jean-Louis PU-PH (HDR)

TROUPLIN Virginie IR CNRS

EQUIPE : E4 - Microorganismes de l'environnement, pneumonies et bioterrorisme RESPONSABLE : LA SCOLA Bernard

THEMATIQUE : Nouveaux agents pathogènes de l'eau et étude de la viabilité des microorganisme dans l'eau. Analyse du transcriptome de Mimivirus. Détection, typage et analyse de la virulence des agents de bioterrorisme, (Coxiella burnetii, Rickettsia sp. Et Francisella LA SCOLA Bernard PU-PH BERLAND Yvon PU-PH


11/30

COLSON Philippe PU-PH

LEPIDI Hubert PU-PH MOAL Valérie PH

PAGNIER Isabelle MCF EQUIPE : E5 - Veille et Approche Entomologique des Maladies Vectorisées Emergentes

RESPONSABLE : PAROLA Philippe THEMATIQUE : Veille et prise en charge des maladies infectieuses émergentes vectorisées. Veille sur les microorganismes associés aux anthropodes BADIAGA Sékéné PH BROUQUI Philippe PU-PH GAUTRET Philippe PH

PAROLA Philippe PU-PH SIMON Fabrice PU HIA SOCOLOVSCHI Christina PAC

EQUIPE : E6 - Mucoviscidoses, microbiote et prise en charge thérapeutique RESPONSABLE : ROLAIN Jean-Marc THEMATIQUE : Evaluation de la sensibilité et de la résistance aux agents anti-infectieux. Détection d'agents infectieux émergents et/ou multi-résistants chez les patients atteints de mucoviscidose

ANDRIEU Véronique MCF BARNAUD André TCH AMU COMMOT Muriel TCH AMU DUBUS Jean-Christophe PU-PH HADJADJ Linda TCH AMU REYNAUD-GAUBERT Martine PU-PH


EQUIPE : E7 - Infections respiratoires sévères émergentes et leur prise en charge

RESPONSABLE : PAPAZIAN Laurent

THEMATIQUE : Identification de nouveaux agents de pneumonies. Modèle expérimental de pneumonie ; pharmacologie-intercations avec la ventilation mécanique. Optimisation de la prise en charge des infections respiratoires BREGEON Fabienne MCU-PH D'JOURNO Benoît PHU DODDOLI Christophe PU-PH

FOREL Jean-Marie PH PAPAZIAN Laurent PU-PH ROCH Antoine PU-PH THOMAS Pascal PU-PH

EQUIPE : E8 - Maladies tropicales émergentes RESPONSABLE : PRADINES Bruno THEMATIQUE : Surveillance et émergence des résistances aux antipaludiques. Développement de

nouveaux médicaments antipaludiques. Amélioration des techniques diagnostiques du paludisme - Contact homme-moustique. Plasmodium vivax

ALMERAS Lionel Chercheur contractuel IRBA AMALVIC Remy TCH IRBA Marseille BASCO Leonardo DR IRD BOUCHIBA Housem TCH IRBA Marseille BOGREAU Hervé Chercheur contractuel IRBA JAUFFRE-MARIN Adeline TCH IRBA Marseille MOKRANE Madjid TCH IRBA Marseille

PASCUAL Aurélie IGR IRBA Marseille POUVELLE Bruno IGR AMU


12/30

PRADINES Bruno Chercheur IRBA

TRAVERS Dominique TCH IRBA Marseille

EQUIPE : E9 - Equipe émergente : Microbiogénomique RESPONSABLE : FOURNIER Pierre-Edouard THEMATIQUE : Génomique bactérienne. Génomique comparative. Evolution. Application

diagnostiques FOURNIER Pierre-Edouard PU-PH GOURIET Frédérique MCU-PH EQUIPE : E10 - Equipe émergente PathoVirome RESPONSABLE : DESNUES Christelle

THEMATIQUE : Métagénomique. Ecologie virale. Biodiversité. Pathologies DESNUES Christelle CR CNRS MONTEIL Sonia IE CNRS

TEMMAM Sarah IR CNRS FANCELLO Laura DOCTORANT

POPGEORGIEV Nikolay POST-DOCTORANT EQUIPE : E11 - Maladies infectieuses persistantes et émergentes en Afrique de l'Ouest : détection, épidémiologique et lutte RESPONSABLE :CHEIKH Sokna THEMATIQUE : Paludisme. Biodiversité des pathogènes émergents

EQUIPE : E12 - Maladies bactériennes vectorisées en Maghreb RESPONSABLE : BITAM Idir THEMATIQUE : Surveillances entomologiques et mammalogiques des agents pathogènes. Détections moléculaires et isolements des agents pathogènes vectorisés. Inventaire des bactéries vectorisées par les puces et les tiques en Maghreb

BENYACOUB Slim PU Université d'Annaba BITAM Idir Maître de Recherche à l'Institut Pasteur d'Alger (HDR) MOUFFOK Nadjet PU CHU Oran BENAKHLA Hmed PU Université d'El Tarf

EQUIPE : E13 - Bio cristallographie, biotechnologie et enzymologie structurale RESPONSABLE : CHABRIERE Eric THEMATIQUE : Etude structurale et enzymatique des protéines, Etude des protéines antivirale DING, Bioingénierie d’une enzyme dextrement robuste pour décontaminer les agents neurotoxiques de guerre et les insecticides, Bioingénierie d’une enzyme dextrement robuste pour

atténuer la virulence bactérienne. Etudes des nanons.

CHABRIERE Eric PU RICHEZ Magali AI, AMU

EQUIPE : E14 - Molecular Parasitology and signaling RESPONSABLE : FORESTIER Claire THEMATIQUE : interactions hôte-pathogènes durant la leishmaniose visecérale.

EQUIPE: E15 – Genome-wide reconstruction of the evolution of the immune system in vertebrates RESPONSABLE :ABI-RACHED Laurent THEMATIQUE : Etude des bases génétiques de la maladie de Whipple, analyse génétique des planaires, analyse génétique des DING et étude comparative des génomes de Borrelia


13/30

ACCUEIL MASTERS

Pathologie Humaine : Maladies transmissibles et pathologies tropicales - Aix-Marseille

EQUIPEMENTS MAJEURS

1/ Plateforme morphologique avec 2 microscopes électroniques 2/ Plateforme de morphologie confocale 3/ Plateforme IBISA de séquençage 4/ Plateforme de protéomique - MALDI-TOF 5/ Plateforme de transcriptome 6/ Plateforme bio-informatique

7/ Plateformes de surveillance sanitaire et démographique 8/ Laboratoire de niveau de sécurité 3 (LNSB3) 9/ Séquenceur de type 4.5.4

CONTRATS ANNÉE 2013

Responsable

Titre

Organisme

Nature

Année

D. RAOULT JC LAGIER

« AIDS gut microbiota : Corrélation de la biodiversité du microbiote digestif de patients séropositifs pour le VIH ... »

AMU ANRS 2013

B LA SCOLA Etude par approche métagénomique et culturomique de la flore bactérienne de l'infection du pied diabétique

AP-HM PHRC 2013

F.BRETELLE

F. FENOLLAR

Vaginoses bactériennes AP-HM STIC 2013

BREVETS ANNÉE 2013

13/54134 (06/05/2013)

Utilisation d'un composé antioxydant pour la culture de bactéries

sensibles à la tension en oxygène

RAOULT DRANCOURT FMI/AMU/APHM/CNRS

13/57282 (24/07/2013)

Méthode de détection de la contamination par un microbe d'un échantillon

par analyse de spectres de

masse

RAOULT CHABRIERE CAMOIN FLAUDROPS

VIALATTE ISNARD GALLIAN CHIARONI

FMI/AMU/APHM/CNRS/EFS

13/59284 (26/09/2013)

Méthode d'analyse d'échantillon biologique

par soustraction des aires totales d'un spectre de

masse d'un échantillon à analyser et d'un spectre

de référence

RAOULT CHABRIERE FLAUDROPS BREGEON

FMI/AMU/APHM/CNRS


14/30

13/59894 (11/10/2013)

Procédé d'identification de l'espèce animale

mammifère d'origine de la

viande ou gélatine d'un échantillon à tester

RAOULT CHABRIERE FLAUDROPS

FMI (cession)

PUBLICATIONS ANNÉE 2013

1: Mishra AK, Lagier JC, Pfleiderer A, Nguyen TT, Caputo A, Raoult D, Fournier PE. Non-contiguous

finished genome sequence and description of Holdemania massiliensis sp. nov. Stand Genomic Sci. 2013 Dec 15;9(2):395-409. 2: Roux V, Million M, Robert C, Magne A, Raoult D. Non-contiguous finished genome sequence and description of Oceanobacillus massiliensis sp. nov. Stand Genomic Sci. 2013 Dec 15;9(2):370-84. 3: Roux V, Robert C, Raoult D. Non-contiguous finished genome sequence of Phocaeicola abscessus

type strain 7401987(T.). Stand Genomic Sci. 2013 Dec15;9(2):351-8.

4: Mishra AK, Edouard S, Dangui NP, Lagier JC, Caputo A, Blanc-Tailleur C, Ravaux I, Raoult D, Fournier PE. Non-contiguous finished genome sequence and description of Nosocomiicoccus massiliensis sp. nov. Stand Genomic Sci. 2013 Oct7;9(1):205-19.

5: Mediannikov O, El Karkouri K, Robert C, Fournier PE, Raoult D. Non-contiguous finished genome sequence and description of Bartonella florenciae sp. nov. Stand Genomic Sci. 2013 Oct 10;9(1):185-96. 6: Hassani II, Robert C, Michelle C, Raoult D, Hacène H, Desnues C. Non-contiguous finished genome sequence and description of Halopiger djelfamassiliensis sp. nov. Stand Genomic Sci. 2013 Oct 5;9(1):160-74. doi: 10.4056/sigs.4578289. eCollection 2013 Oct 16. PubMed PMID:

24501653; PubMed Central PMCID: PMC3910545. 7: Keita MB, Diene SM, Robert C, Raoult D, Fournier PE, Bittar F. Non-contiguous finished genome sequence and description of Bacillus massiliogorillae sp. nov. Stand Genomic Sci. 2013 Oct 2;9(1):93-105. doi: 10.4056/sigs.4388124. eCollection 2013 Oct 16. PubMed PMID: 24501648; PubMed Central PMCID: PMC3910557.

8: Lo CI, Mishra AK, Padhmanabhan R, Samb B, Sow AG, Robert C, Couderc C, Faye N, Raoult D, Fournier PE, Fenollar F. Non-contiguous finished genome sequence and description of Clostridium dakarense sp. nov. Stand Genomic Sci. 2013 Sep 30;9(1):14-27. doi: 10.4056/sigs.4097825. eCollection 2013 Oct 16. PubMed PMID: 24501642; PubMed Central PMCID: PMC3910555. 9: Elbir H, Robert C, Nguyen TT, Gimenez G, El Sanousi SM, Flock JI, Raoult D, Drancourt M.

Staphylococcus aureus subsp. anaerobius strain ST1464 genome sequence. Stand Genomic Sci. 2013 Oct 15;9(1):1-13. doi: 10.4056/sigs.3748294. eCollection 2013 Oct 16. PubMed PMID: 24501641; PubMed Central PMCID: PMC3910551. 10: Pagnier I, Croce O, Robert C, Raoult D, La Scola B. Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium. Stand Genomic Sci. 2013 Aug 10;8(3):548-60. doi: 10.4056/sigs.4177252.

eCollection 2013 Jul 30. PubMed PMID: 24501638; PubMed Central PMCID: PMC3910703. 11: Padmanabhan R, Lagier JC, Dangui NP, Michelle C, Couderc C, Raoult D, Fournier PE. Non-

contiguous finished genome sequence and description of Megasphaera massiliensis sp. nov. Stand Genomic Sci. 2013 Aug 7;8(3):525-38. doi: 10.4056/sigs.4077819. eCollection 2013 Jul 30. PubMed PMID: 24501636; PubMed Central PMCID: PMC3910696.

12: Hugon P, Ramasamy D, Robert C, Couderc C, Raoult D, Fournier PE. Non-contiguous finished genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI. Stand Genomic Sci. 2013 Jul 30;8(3):500-15. doi: 10.4056/sigs.4047997. eCollection 2013 Jul 30. PubMed PMID: 24501634; PubMed Central PMCID: PMC3910704.


15/30

13: Mishra AK, Pfleiderer A, Lagier JC, Robert C, Raoult D, Fournier PE. Non-contiguous finished

genome sequence and description of Bacillus massilioanorexius sp. nov. Stand Genomic Sci. 2013 Jul 30;8(3):465-79. doi: 10.4056/sigs.4087826. eCollection 2013 Jul 30. PubMed PMID:

24501631; PubMed Central PMCID: PMC3910694. 14: Cohen L, Ranque S, Raoult D. Saccharomyces cerevisiae boulardii transient fungemia after

intravenous self-inoculation. Med Mycol Case Rep. 2013 Feb 14;2:63-4. doi: 10.1016/j.mmcr.2013.02.003. eCollection 2013 Feb 14. PubMed PMID: 24432219; PubMed Central PMCID: PMC3885949. 15: El Kaoutari A, Armougom F, Leroy Q, Vialettes B, Million M, Raoult D, Henrissat B. Development and validation of a microarray for the investigation of the CAZymes encoded by the human gut microbiome. PLoS One. 2013 Dec 31;8(12):e84033. doi:

10.1371/journal.pone.0084033. eCollection 2013. PubMed PMID: 24391873; PubMed Central PMCID: PMC3877134. 16: De la Cruz MA, Zhao W, Farenc C, Gimenez G, Raoult D, Cambillau C, Gorvel JP, Méresse S. A toxin-antitoxin module of Salmonella promotes virulence in mice. PLoS Pathog.

2013;9(12):e1003827. doi: 10.1371/journal.ppat.1003827. Epub 2013 Dec 19. PubMed PMID: 24385907; PubMed Central PMCID: PMC3868539.

17: Mediannikov O, Diatta G, Kasongo K, Raoult D. Identification of Bartonellae in the soft tick species Ornithodoros sonrai in Senegal. Vector Borne Zoonotic Dis. 2014 Jan;14(1):26-32. doi: 10.1089/vbz.2013.1326. Epub 2013 Dec 20. PubMed PMID: 24359424; PubMed Central PMCID: PMC3880920.

18: Kumsa B, Parola P, Raoult D, Socolovschi C. Bartonella melophagi in Melophagus ovinus (sheep ked) collected from sheep in northern Oromia, Ethiopia. Comp Immunol Microbiol Infect Dis. 2014 Jan;37(1):69-76. doi: 10.1016/j.cimid.2013.11.001. Epub 2013 Nov 9. PubMed PMID: 24326024. 19: Bouricha M, Samad MA, Levy PY, Raoult D, Drancourt M. Point-of-care syndrome-based, rapid diagnosis of infections on commercial ships. J Travel Med. 2014 Jan-Feb;21(1):12-6. doi: 10.1111/jtm.12090. Epub 2013 Dec 3. PubMed PMID:

24298957.

20: Yoosuf N, Pagnier I, Fournous G, Robert C, La Scola B, Raoult D, Colson P. Complete genome sequence of Courdo11 virus, a member of the family Mimiviridae. Virus Genes. 2014 Apr;48(2):218-23. doi: 10.1007/s11262-013-1016-x. Epub 2013 Dec 1. PubMed PMID: 24293219.

21: Le Blay P, Rakotonirainy H, Lagier JC, Raoult D, Puechal X, Pers YM. A severe Whipple disease with an immune reconstitution inflammatory syndrome: an additional case of thalidomide efficiency. Joint Bone Spine. 2014 May; 81(3):260-2. doi: 10.1016/j.jbspin.2013.10.007. Epub 2013 Nov 28. PubMed PMID: 24289960. 22: Boughalmi M, Pagnier I, Aherfi S, Colson P, Raoult D, La Scola B. First isolation of a giant virus

from wild Hirudo medicinalis leech: Mimiviridae isolation in Hirudo medicinalis. Viruses. 2013 Nov 27;5(12):2920-30. doi: 10.3390/v5122920. PubMed PMID: 24287596; PubMed Central PMCID: PMC3967153. 23: Sentausa E, Abdad MY, Robert C, Stenos J, Raoult D, Fournier PE. Genome Sequence of Rickettsia gravesii, Isolated from Western Australian Ticks. Genome Announc. 2013 Nov 27;1(6).

pii: e00975-13. doi: 10.1128/genomeA.00975-13. PubMed PMID: 24285646; PubMed Central

PMCID: PMC3869331. 24: Abat C, Chaudet H, Raoult D, Colson P. Increasing trend of invasive group B streptococcal infections, Marseille, France. Clin Infect Dis. 2014 Mar;58(5):750-1. doi: 10.1093/cid/cit777. Epub 2013 Nov 26. PubMed PMID: 24280092. 25: Hernández-López A, Chabrol O, Royer-Carenzi M, Merhej V, Pontarotti P, Raoult D. To tree or

not to tree? Genome-wide quantification of recombination and reticulate evolution during the diversification of strict intracellular bacteria. Genome Biol Evol. 2013;5(12):2305-17. doi: 10.1093/gbe/evt178. PubMed PMID:24259310; PubMed Central PMCID: PMC3879967.


16/30

26: Raoult D, Charrel R, Gautret P, Parola P. From the Hajj: it's the flu, idiot. Clin Microbiol Infect.

2014 Jan;20(1):O1. doi: 10.1111/1469-0691.12448. Epub 2013 Nov 26. PubMed PMID: 24256052.

27: Lagier JC, Dubourg G, Cassir N, Fournier PE, Colson P, Richet H, Brouqui P, Raoult D. Clostridium difficile 027 emerging outbreak in Marseille, France. Infect Control Hosp Epidemiol. 2013 Dec;34(12):1339-41. doi: 10.1086/673995.

PubMed PMID: 24225631. 28: Fenollar F, Célard M, Lagier JC, Lepidi H, Fournier PE, Raoult D. Tropheryma whipplei endocarditis. Emerg Infect Dis. 2013 Nov;19(11):1721-30. doi: 10.3201/eid1911.121356. Review. PubMed PMID: 24207100; PubMed Central PMCID: PMC3837638. 29: Boutellis A, Drali R, Rivera MA, Mumcuoglu KY, Raoult D. Evidence of sympatry of clade a and

clade B head lice in a pre-Columbian Chilean mummy from Camarones. PLoS One. 2013 Oct 30;8(10):e76818. doi: 10.1371/journal.pone.0076818. eCollection 2013. PubMed PMID: 24204678; PubMed Central PMCID: PMC3813697. 30: Padmanabhan R, Mishra AK, Raoult D, Fournier PE. Genomics and metagenomics in medical

microbiology. J Microbiol Methods. 2013 Dec;95(3):415-24. doi: 10.1016/j.mimet.2013.10.006. Epub 2013 Nov 5. Review. PubMed PMID: 24200711.

31: Million M, Raoult D. Reply to Kampschreur et al. Clin Infect Dis. 2014 Feb;58(3):447-8. doi: 10.1093/cid/cit720. Epub 2013 Nov 5. PubMed PMID: 24192387. 32: Mediannikov O, Socolovschi C, Edouard S, Fenollar F, Mouffok N, Bassene H, Diatta G, Tall A, Niangaly H, Doumbo O, Lekana-Douki JB, Znazen A, Sarih M, Ratmanov P, Richet H, Ndiath MO,

Sokhna C, Parola P, Raoult D. Common epidemiology of Rickettsia felis infection and malaria, Africa. Emerg Infect Dis. 2013 Nov;19(11):1775-83. doi: 10.3201/eid1911.130361. PubMed PMID: 24188709; PubMed Central PMCID: PMC3837673. 33: Edouard S, Million M, Royer G, Giorgi R, Grisoli D, Raoult D. Reduction in incidence of Q fever endocarditis: 27 years of experience of a national reference center. J Infect. 2014 Feb;68(2):141-8. doi: 10.1016/j.jinf.2013.10.010. Epub 2013 Oct 29. PubMed PMID: 24183890.

34: Popgeorgiev N, Colson P, Thuret I, Chiarioni J, Gallian P, Raoult D, Desnues C. Marseillevirus

prevalence in multitransfused patients suggests blood transmission. J Clin Virol. 2013 Dec;58(4):722-5. doi: 10.1016/j.jcv.2013.10.001. Epub 2013 Oct 15. PubMed PMID: 24183312. 35: Veracx A, Boutellis A, Raoult D. Genetic recombination events between sympatric Clade A and Clade C lice in Africa. J Med Entomol. 2013 Sep;50(5):1165-8. PubMed PMID: 24180123.

36: Angelakis E, Mediannikov O, Stein A, Bassene H, Sokhna C, Raoult D. Throat swab samples for diagnosis of Q fever. Am J Trop Med Hyg. 2014 Jan;90(1):147-8. doi: 10.4269/ajtmh.13-0490. Epub 2013 Oct 28. PubMed PMID: 24166041; PubMed Central PMCID: PMC3886411.

37: Slimani M, Pagnier I, Boughalmi M, Raoult D, La Scola B. Alcohol disinfection procedure for isolating giant viruses from contaminated samples. Intervirology. 2013;56(6):434-40. doi: 10.1159/000354566. Epub 2013 Oct 17. PubMed PMID: 24157890. 38: Saadi H, Reteno DG, Colson P, Aherfi S, Minodier P, Pagnier I, Raoult D, La Scola B. Shan virus: a new mimivirus isolated from the stool of a Tunisian patient with pneumonia. Intervirology. 2013;56(6):424-9. doi: 10.1159/000354564. Epub 2013 Oct 17. PubMed PMID: 24157888.

39: Ngounga T, Pagnier I, Reteno DG, Raoult D, La Scola B, Colson P. Real-time PCR systems targeting giant viruses of amoebae and their virophages. Intervirology. 2013;56(6):413-23. doi: 10.1159/000354563. Epub 2013 Oct 17. PubMed PMID: 24157887. 40: Popgeorgiev N, Temmam S, Raoult D, Desnues C. Describing the silent human virome with an emphasis on giant viruses. Intervirology. 2013;56(6):395-412. doi: 10.1159/000354561. Epub

2013 Oct 17. Review. PubMed PMID: 24157886.


17/30

41: Boughalmi M, Pagnier I, Aherfi S, Colson P, Raoult D, La Scola B. First isolation of a

Marseillevirus in the Diptera Syrphidae Eristalis tenax. Intervirology. 2013;56(6):386-94. doi: 10.1159/000354560. Epub 2013 Oct 17. PubMed PMID: 24157885.

42: Colson P, La Scola B, Raoult D. Giant viruses of amoebae as potential human pathogens. Intervirology. 2013;56(6):376-85. doi: 10.1159/000354558. Epub 2013 Oct 17. Review. PubMed PMID: 24157884.

43: Colson P, Fournous G, Diene SM, Raoult D. Codon usage, amino acid usage, transfer RNA and amino-acyl-tRNA synthetases in Mimiviruses. Intervirology. 2013;56(6):364-75. doi: 10.1159/000354557. Epub 2013 Oct 17. PubMed PMID: 24157883. 44: Pagnier I, Reteno DG, Saadi H, Boughalmi M, Gaia M, Slimani M, Ngounga T, Bekliz M, Colson P, Raoult D, La Scola B. A decade of improvements in Mimiviridae and Marseilleviridae isolation

from amoeba. Intervirology. 2013;56(6):354-63. doi: 10.1159/000354556. Epub 2013 Oct 17. PubMed PMID: 24157882. 45: Raoult D. A need to discover the world of giant viruses. Intervirology. 2013;56(6):347-8. doi: 10.1159/000355317. Epub 2013 Oct 17. PubMed PMID: 24157881.

46: Compain C, Sacre K, Puéchal X, Klein I, Vital-Durand D, Houeto JL, De

Broucker T, Raoult D, Papo T. Central nervous system involvement in Whipple disease: clinical study of 18 patients and long-term follow-up. Medicine (Baltimore). 2013 Nov;92(6):324-30. doi: 10.1097/MD.0000000000000010. PubMed PMID: 24145700. 47: Thuny F, Lass O, Saby L, Tessonnier L, Cammilleri S, Casalta JP, Mundler O, Raoult D, Habib G.

Reply: positron emission tomography/computed tomography for diagnosis of prosthetic valve endocarditis. J Am Coll Cardiol. 2014 Jan 21;63(2):187-9. doi: 10.1016/j.jacc.2013.09.034. Epub 2013 Oct 16. PubMed PMID: 24140669. 48: Levy PY, Fournier PE, Fenollar F, Raoult D. Systematic PCR detection in culture-negative osteoarticular infections. Am J Med. 2013 Dec;126(12):1143.e25-33. doi: 10.1016/j.amjmed.2013.04.027. Epub 2013 Oct 14. PubMed PMID: 24135511.

49: Stein A, Doutchi M, Fenollar F, Raoult D. Tropheryma whipplei pneumonia in a patient with

HIV-2 infection. Am J Respir Crit Care Med. 2013 Oct 15;188(8):1036-7. doi: 10.1164/rccm.201304-0692LE. PubMed PMID: 24127807. 50: Muhammed Ameen S, Rolain JM, Le Poullain MN, Roux V, Raoult D, Drancourt M. Serum concentration of co-trimoxazole during a high-dosage regimen. J Antimicrob Chemother. 2014

Mar;69(3):757-60. doi: 10.1093/jac/dkt400. Epub 2013 Oct 11. PubMed PMID: 24123429. 51: Raoult D. Impact factors of scientific journals: the new season. Clin Microbiol Infect. 2013 Nov;19(11):989-90. doi: 10.1111/1469-0691.12353. PubMed PMID: 24118619.

52: Angelakis E, Oddoze C, Raoult D. Vitamin D and prolonged treatment with photosensitivity-associated antibiotics. Antimicrob Agents Chemother. 2013 Dec;57(12):6409-10. doi: 10.1128/AAC.01969-13. Epub 2013 Oct 7. PubMed PMID: 24100505; PubMed Central PMCID: PMC3837883.

53: Parola P, Paddock CD, Socolovschi C, Labruna MB, Mediannikov O, Kernif T, Abdad MY, Stenos

J, Bitam I, Fournier PE, Raoult D. Update on tick-borne rickettsioses around the world: a geographic approach. Clin Microbiol Rev. 2013 Oct;26(4):657-702. doi: 10.1128/CMR.00032-13. Review. PubMed PMID: 24092850; PubMed Central PMCID: PMC3811236. 54: Brouqui P, Aubry C, Million M, Drancourt M, Raoult D. Totally resistant tuberculosis: will antileprosy drugs be helpful? Int J Antimicrob Agents. 2013 Dec;42(6):584-5. doi: 10.1016/j.ijantimicag.2013.08.004. Epub 2013 Sep 7. PubMed PMID: 24091129.


18/30

55: Foissac M, Socolovschi C, Raoult D. [Update on SENLAT syndrome: scalp eschar

and neck lymph adenopathy after a tick bite]. Ann Dermatol Venereol. 2013 Oct;140(10):598-609. doi: 10.1016/j.annder.2013.07.014. Epub 2013 Aug 23. Review.

French. PubMed PMID: 24090889. 56: Popgeorgiev N, Michel G, Lepidi H, Raoult D, Desnues C. Marseillevirus adenitis in an 11-month-old child. J Clin Microbiol. 2013 Dec;51(12):4102-5. doi: 10.1128/JCM.01918-13. Epub

2013 Oct 2. PubMed PMID: 24088856; PubMed Central PMCID: PMC3838047. 57: Lagier JC, Fenollar F, Koric L, Guedj E, Ceccaldi M, Raoult D. [Weight loss, dementia and ataxia susceptible to doxycycline: a likely new case report caused by T. whipplei]. Rev Med Interne. 2013 Oct;34(10):641-4. doi: 10.1016/j.revmed.2012.12.006. Epub 2013 Sep 26. French. PubMed PMID: 24075626.

58: Angelakis E, Merhej V, Raoult D. Related actions of probiotics and antibiotics on gut microbiota and weight modification. Lancet Infect Dis. 2013 Oct;13(10):889-99. doi: 10.1016/S1473-3099(13)70179-8. Review. PubMed PMID: 24070562. 59: Delaunay V, Douillot L, Diallo A, Dione D, Trape JF, Medianikov O, Raoult D, Sokhna C. Profile:

the Niakhar Health and Demographic Surveillance System. Int J Epidemiol. 2013 Aug;42(4):1002-11. doi: 10.1093/ije/dyt100. PubMed PMID: 24062286; PubMed Central PMCID: PMC3781002.

60: Edouard S, Raoult D. Use of the plaque assay for testing the antibiotic susceptibility of intracellular bacteria. Future Microbiol. 2013 Oct;8(10):1301-16. doi: 10.2217/fmb.13.98. Review. PubMed PMID: 24059920. 61: Xiong H, Barker SC, Burger TD, Raoult D, Shao R. Heteroplasmy in the mitochondrial genomes

of human lice and ticks revealed by high throughput sequencing. PLoS One. 2013 Sep 13;8(9):e73329. doi: 10.1371/journal.pone.0073329. eCollection 2013. PubMed PMID: 24058467; PubMed Central PMCID: PMC3772822. 62: Foissac M, Socolovschi C, Raoult D. [Lymphangitis-associated rickettsiosis caused by Rickettsia sibirica mongolitimonae]. Ann Dermatol Venereol. 2013 Aug-Sep;140(8-9):521-7. doi: 10.1016/j.annder.2013.04.096. Epub 2013 Jun 3. Review. French. PubMed PMID: 24034636.

63: Fournier PE, Drancourt M, Colson P, Rolain JM, La Scola B, Raoult D. Modern clinical

microbiology: new challenges and solutions. Nat Rev Microbiol. 2013 Aug;11(8):574-85. Review. PubMed PMID: 24020074. 64: Hugon P, Ramasamy D, Lagier JC, Rivet R, Couderc C, Raoult D, Fournier PE. Non contiguous-finished genome sequence and description of Alistipes obesi sp. nov. Stand Genomic Sci. 2013 Feb

25;7(3):427-39. doi: 10.4056/sigs.3336746. eCollection 2013. PubMed PMID: 24019990; PubMed Central PMCID: PMC3764931. 65: Lagier JC, El Karkouri K, Mishra AK, Robert C, Raoult D, Fournier PE. Non contiguous-finished genome sequence and description of Enterobacter massiliensis sp. nov. Stand Genomic Sci. 2013 Feb 22;7(3):399-412. doi: 10.4056/sigs.3396830. eCollection 2013. PubMed PMID: 24019988;

PubMed Central PMCID: PMC3764934. 66: Mishra AK, Lagier JC, Nguyen TT, Raoult D, Fournier PE. Non contiguous-finished genome sequence and description of Peptoniphilus senegalensis sp. nov. Stand Genomic Sci. 2013 Feb 22;7(3):370-81. doi: 10.4056/sigs.3366764. eCollection 2013. PubMed PMID: 24019986; PubMed Central PMCID: PMC3764932.

67: Mishra AK, Hugon P, Lagier JC, Nguyen TT, Robert C, Couderc C, Raoult D, Fournier PE. Non contiguous-finished genome sequence and description of Peptoniphilus obesi sp. nov. Stand Genomic Sci. 2013 Feb 25;7(3):357-69. doi: 10.4056/sigs.3276687. eCollection 2013. PubMed PMID: 24019985; PubMed Central PMCID: PMC3764929. 68: Lagier JC, Elkarkouri K, Rivet R, Couderc C, Raoult D, Fournier PE. Non contiguous-finished

genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov. Stand Genomic Sci. 2013 Feb 25;7(3):343-56. doi: 10.4056/sigs.3246665. eCollection 2013. PubMed PMID: 24019984; PubMed Central PMCID: PMC3764928.


19/30

69: Angelakis E, Socolovschi C, Raoult D. Bartonella quintana in Cimex hemipterus, Rwanda. Am J

Trop Med Hyg. 2013 Nov;89(5):986-7. doi: 10.4269/ajtmh.13-0182. Epub 2013 Sep 9. PubMed PMID: 24019440; PubMed Central

PMCID: PMC3820348. 70: Million M, Thuny F, Angelakis E, Casalta JP, Giorgi R, Habib G, Raoult D. Lactobacillus reuteri and Escherichia coli in the human gut microbiota may predict weight gain associated with

vancomycin treatment. Nutr Diabetes. 2013 Sep 9;3:e87. doi: 10.1038/nutd.2013.28. PubMed PMID: 24018615; PubMed Central PMCID: PMC3789131. 71: Levy PY, Ollivier M, Drancourt M, Raoult D, Argenson JN. Relation between nasal carriage of Staphylococcus aureus and surgical site infection in orthopedic surgery: the role of nasal contamination. A systematic literature review and meta-analysis. Orthop Traumatol Surg Res. 2013

Oct;99(6):645-51. doi: 10.1016/j.otsr.2013.03.030. Epub 2013 Aug 29. Review. PubMed PMID: 23992764. 72: Ramasamy D, Lagier JC, Nguyen TT, Raoult D, Fournier PE. Non contiguous-finished genome sequence and description of Dielma fastidiosa gen. nov., sp. nov., a new member of the Family

Erysipelotrichaceae. Stand Genomic Sci. 2013 Jun 13;8(2):336-51. doi: 10.4056/sigs.3567059. eCollection 2013. PubMed PMID: 23991263; PubMed Central PMCID: PMC3746426.

73: Mishra AK, Lagier JC, Robert C, Raoult D, Fournier PE. Genome sequence and description of Timonella senegalensis gen. nov., sp. nov., a new member of the suborder Micrococcinae. Stand Genomic Sci. 2013 Jun 13;8(2):318-35. doi: 10.4056/sigs.3476977. eCollection 2013. PubMed PMID: 23991262; PubMed Central PMCID: PMC3746429.

74: Sassi M, Robert C, Raoult D, Drancourt M. Non-contiguous genome sequence of Mycobacterium simiae strain DSM 44165(T.). Stand Genomic Sci. 2013 Jun 7;8(2):306-17. doi: 10.4056/sigs.3707349. eCollection 2013. PubMed PMID: 23991261; PubMed Central PMCID: PMC3746425. 75: Mishra AK, Hugon P, Lagier JC, Nguyen TT, Couderc C, Raoult D, Fournier PE. Non contiguous-

finished genome sequence and description of Enorma massiliensis gen. nov., sp. nov., a new member of the Family Coriobacteriaceae. Stand Genomic Sci. 2013 Jun 6;8(2):290-305. doi:

10.4056/sigs.3426906. eCollection 2013. PubMed PMID: 23991260; PubMed Central PMCID: PMC3746427. 76: Mediannikov O, El Karkouri K, Diatta G, Robert C, Fournier PE, Raoult D. Non-contiguous finished genome sequence and description of Bartonella senegalensis sp. nov. Stand Genomic Sci.

2013 Jun 6;8(2):279-89. doi: 10.4056/sigs.3807472. eCollection 2013. PubMed PMID: 23991259; PubMed Central PMCID: PMC3746424. 77: Ramasamy D, Lagier JC, Gorlas A, Raoult D, Fournier PE. Non contiguous-finished genome sequence and description of Bacillus massiliosenegalensis sp. nov. Stand Genomic Sci. 2013 Jun 5;8(2):264-78. doi: 10.4056/sigs.3496989. eCollection 2013. PubMed PMID: 23991258; PubMed

Central PMCID: PMC3746431. 78: Yssouf A, Socolovschi C, Flaudrops C, Ndiath MO, Sougoufara S, Dehecq JS, Lacour G, Berenger JM, Sokhna CS, Raoult D, Parola P. Matrix-assisted laser desorption ionization--time of flight mass spectrometry: an emerging tool for the rapid identification of mosquito vectors. PLoS One. 2013 Aug 15;8(8):e72380. doi: 10.1371/journal.pone.0072380. eCollection 2013. PubMed

PMID: 23977292; PubMed Central PMCID: PMC3744494.

79: Hugon P, Mishra AK, Lagier JC, Nguyen TT, Couderc C, Raoult D, Fournier PE. Non-contiguous finished genome sequence and description of Brevibacillus massiliensis sp. nov. Stand Genomic Sci. 2013 Apr 15;8(1):1-14. doi: 10.4056/sigs.3466975. eCollection 2013 Apr 15. PubMed PMID: 23961307; PubMed Central PMCID: PMC3739172.

80: Sassi M, Robert C, Raoult D, Drancourt M. Noncontiguous Genome Sequence of Mycobacterium septicum Strain DSM 44393T. Genome Announc. 2013 Aug 15;1(4). pii: e00574-13. doi: 10.1128/genomeA.00574-13. PubMed PMID: 23950116; PubMed Central PMCID: PMC3744672.


20/30

81: Lagier JC, Fenollar F, Lepidi H, Giorgi R, Million M, Raoult D. Treatment of classic Whipple's disease: from in vitro results to clinical outcome. J Antimicrob Chemother. 2014 Jan;69(1):219-27.

doi: 10.1093/jac/dkt310. Epub 2013 Aug 14. PubMed PMID: 23946319. 82: Edouard S, Subramanian G, Lefevre B, Dos Santos A, Pouedras P, Poinsignon Y, Mediannikov O, Raoult D. Co-infection with Arsenophonus nasoniae and Orientia tsutsugamushi in a traveler.

Vector Borne Zoonotic Dis. 2013 Aug;13(8):565-71. doi: 10.1089/vbz.2012.1083. Epub 2013 May 13. PubMed PMID: 23930974. 83: Elbir H, Raoult D, Drancourt M. Relapsing fever borreliae in Africa. Am J Trop Med Hyg. 2013 Aug;89(2):288-92. doi: 10.4269/ajtmh.12-0691. Review. PubMed PMID: 23926141; PubMed Central PMCID: PMC3741250.

84: Aherfi S, Pagnier I, Fournous G, Raoult D, La Scola B, Colson P. Complete genome sequence of Cannes 8 virus, a new member of the proposed family "Marseilleviridae". Virus Genes. 2013 Dec;47(3):550-5. doi: 10.1007/s11262-013-0965-4. Epub 2013 Aug 4. PubMed PMID: 23912978. 85: Hubert S, Thuny F, Resseguier N, Giorgi R, Tribouilloy C, Le Dolley Y, Casalta JP, Riberi A,

Chevalier F, Rusinaru D, Malaquin D, Remadi JP, Ammar AB, Avierinos JF, Collart F, Raoult D, Habib G. Prediction of symptomatic embolism in infective

endocarditis: construction and validation of a risk calculator in a multicenter cohort. J Am Coll Cardiol. 2013 Oct 8;62(15):1384-92. doi: 10.1016/j.jacc.2013.07.029. Epub 2013 Aug 7. PubMed PMID: 23906859. 86: Richet H, Carrieri P, Loffeier V, Cassir N, La Scola B, Obadia Y, Raoult D. Health-care-associated bloodstream infections in France. Lancet Infect Dis. 2013 Aug;13(8):656. doi:

10.1016/S1473-3099(13)70189-0. PubMed PMID: 23886333. 87: Drancourt M, Gaydos CA, Summersgill JT, Raoult D. Point-of-care testing for community-acquired pneumonia. Lancet Infect Dis. 2013 Aug;13(8):647-9. doi: 10.1016/S1473-3099(13)70165-8. PubMed PMID: 23886323. 88: Hugon P, Lagier JC, Robert C, Lepolard C, Papazian L, Musso D, Vialettes B, Raoult D.

Molecular studies neglect apparently gram-negative populations in the human gut microbiota. J Clin Microbiol. 2013 Oct;51(10):3286-93. doi: 10.1128/JCM.00473-13. Epub 2013 Jul 24. PubMed

PMID: 23885002; PubMed Central PMCID: PMC3811629. 89: Raoult D, Foti B, Aboudharam G. Historical and geographical parallelism between the incidence of dental caries, Streptococcus mutans and sugar intake. Eur J Epidemiol. 2013 Aug;28(8):709-10.

doi: 10.1007/s10654-013-9826-7. Epub 2013 Jul 24. PubMed PMID: 23880892; PubMed Central PMCID: PMC3778904. 90: Ouchenane Z, Agabou A, Smati F, Rolain JM, Raoult D. Staphylococcal cassette chromosome mec characterization of methicillin-resistant Staphylococcus aureus strains isolated at the military hospital of Constantine/Algeria. Pathol Biol (Paris). 2013 Dec;61(6):280-1. doi:

10.1016/j.patbio.2013.05.006. Epub 2013 Jul 20. PubMed PMID: 23880229. 91: Neuberger A, Paul M, Nizar A, Raoult D. Modelling in infectious diseases: between haphazard and hazard. Clin Microbiol Infect. 2013 Nov;19(11):993-8. doi: 10.1111/1469-0691.12309. Epub 2013 Jul 23. Review. PubMed PMID: 23879334.

92: Raoult D. TRUC or the need for a new microbial classification. Intervirology. 2013;56(6):349-

53. doi: 10.1159/000354269. Epub 2013 Jul 18. Review. PubMed PMID: 23867259. 93: Lalani T, Chu VH, Park LP, Cecchi E, Corey GR, Durante-Mangoni E, Fowler VG Jr, Gordon D, Grossi P, Hannan M, Hoen B, Muñoz P, Rizk H, Kanj SS, Selton-Suty C, Sexton DJ, Spelman D, Ravasio V, Tripodi MF, Wang A; International Collaboration on Endocarditis–Prospective Cohort Study Investigators. In-hospital and 1-year mortality in patients undergoing early surgery for

prosthetic valve endocarditis. JAMA Intern Med. 2013 Sep 9;173(16):1495-504. doi: 10.1001/jamainternmed.2013.8203. Erratum in: JAMA Intern Med. 2013 Oct 28;173(19):1846. PubMed PMID: 23857547.


21/30

94: Edouard S, Million M, Lepidi H, Rolain JM, Fournier PE, La Scola B, Grisoli D, Raoult D.

Persistence of DNA in a cured patient and positive culture in cases with low antibody levels bring into question diagnosis of Q fever endocarditis. J Clin Microbiol. 2013 Sep;51(9):3012-7. doi:

10.1128/JCM.00812-13. Epub 2013 Jul 12. PubMed PMID: 23850956; PubMed Central PMCID: PMC3754656. 95: Hraiech S, Roch A, Lepidi H, Atieh T, Audoly G, Rolain JM, Raoult D, Brunel

JM, Papazian L, Brégeon F. Impaired virulence and fitness of a colistin-resistant clinical isolate of Acinetobacter baumannii in a rat model of pneumonia. Antimicrob Agents Chemother. 2013 Oct;57(10):5120-1. doi: 10.1128/AAC.00700-13. Epub 2013 Jul 8. PubMed PMID: 23836181; PubMed Central PMCID: PMC3811450. 96: Popgeorgiev N, Boyer M, Fancello L, Monteil S, Robert C, Rivet R, Nappez C, Azza S, Chiaroni J, Raoult D, Desnues C. Marseillevirus-like virus recovered from blood donated by asymptomatic

humans. J Infect Dis. 2013 Oct 1;208(7):1042-50. doi: 10.1093/infdis/jit292. Epub 2013 Jul 2. PubMed PMID: 23821720. 97: Merhej V, Georgiades K, Raoult D. Postgenomic analysis of bacterial pathogens repertoire reveals genome reduction rather than virulence factors. Brief Funct Genomics. 2013 Jul;12(4):291-

304. doi: 10.1093/bfgp/elt015. Epub 2013 Jun 29. PubMed PMID: 23814139.

98: Colson P, De Lamballerie X, Yutin N, Asgari S, Bigot Y, Bideshi DK, Cheng XW, Federici BA, Van Etten JL, Koonin EV, La Scola B, Raoult D. "Megavirales", a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses. Arch Virol. 2013 Dec;158(12):2517-21. doi: 10.1007/s00705-013-1768-6. Epub 2013 Jun 29. PubMed PMID: 23812617; PubMed Central PMCID: PMC4066373. 99: Mehraj V, Textoris J, Ben Amara A, Ghigo E, Raoult D, Capo C, Mege JL.

Monocyte responses in the context of Q fever: from a static polarized model to a kinetic model of activation. J Infect Dis. 2013 Sep;208(6):942-51. doi: 10.1093/infdis/jit266. Epub 2013 Jun 24. PubMed PMID: 23801603. 100: Casalta JP, Zaratzian C, Hubert S, Thuny F, Gouriet F, Habib G, Grisoli D, Deharo JC, Raoult D. Treatment of Staphylococcus aureus endocarditis with high doses of trimethoprim/sulfamethoxazole and clindamycin-Preliminary report. Int J Antimicrob Agents. 2013

Aug;42(2):190-1. doi: 10.1016/j.ijantimicag.2013.05.002. Epub 2013 Jun 21. PubMed PMID: 23796892.

101: Million M, Walter G, Thuny F, Habib G, Raoult D. Evolution from acute Q fever to endocarditis is associated with underlying valvulopathy and age and can be prevented by prolonged antibiotic treatment. Clin Infect Dis. 2013 Sep;57(6):836-44. doi: 10.1093/cid/cit419. Epub 2013 Jun 20. PubMed PMID: 23794723.

102: Mahamat A, Edouard S, Demar M, Abboud P, Patrice JY, La Scola B, Okandze A, Djossou F, Raoult D. Unique clone of Coxiella burnetii causing severe Q fever, French Guiana. Emerg Infect Dis. 2013 Jul;19(7):1102-4. doi: 10.3201/eid1907.130044. PubMed PMID: 23763958; PubMed Central PMCID: PMC3713989.

103: Donatin E, Buffet S, Leroy Q, Raoult D, Drancourt M. A DNA microarray for the versatile diagnosis of infectious diarrhea. APMIS. 2013 Jul;121(7):634-42. doi: 10.1111/apm.12081. Epub 2013 Jun 12. PubMed PMID: 23758523. 104: Million M, Raoult D. The pathogenesis of the antiphospholipid syndrome. N Engl J Med. 2013 Jun 13;368(24):2335. doi: 10.1056/NEJMc1304515#SA2. PubMed PMID: 23758255.

105: Suárez C, Welsch S, Chlanda P, Hagen W, Hoppe S, Kolovou A, Pagnier I, Raoult D, Krijnse Locker J. Open membranes are the precursors for assembly of large DNA viruses. Cell Microbiol. 2013 Nov;15(11):1883-95. doi: 10.1111/cmi.12156. Epub 2013 Jul 5. PubMed PMID: 23751082; PubMed Central PMCID: PMC4189181. 106: Piarroux R, Abedi AA, Shako JC, Kebela B, Karhemere S, Diatta G, Davoust B, Raoult D, Drancourt M. Plague epidemics and lice, Democratic Republic of the Congo. Emerg Infect Dis. 2013

Mar;19(3):505-6. PubMed PMID: 23750356; PubMed Central PMCID: PMC3647677.


22/30

107: Jiyipong T, Morand S, Jittapalapong S, Raoult D, Rolain JM. Bordetella hinzii in rodents,

Southeast Asia. Emerg Infect Dis. 2013 Mar;19(3):502-3. PubMed PMID: 23750354; PubMed Central PMCID: PMC3647655.

108: El Kaoutari A, Armougom F, Gordon JI, Raoult D, Henrissat B. The abundance and variety of carbohydrate-active enzymes in the human gut microbiota. Nat Rev Microbiol. 2013 Jul;11(7):497-504. doi: 10.1038/nrmicro3050. Epub 2013 Jun 10. PubMed PMID: 23748339.

109: Thuny F, Saby L, Tessonier L, Cammilleri S, Raoult D, Habib G. Reply: positron emission tomography/computed tomography for diagnosis of prosthetic valve endocarditis. J Am Coll Cardiol. 2013 Aug 27;62(9):861-2. doi: 10.1016/j.jacc.2013.05.038. Epub 2013 Jun 7. PubMed PMID: 23747782. 110: Atieh T, Audoly G, Hraiech S, Lepidi H, Roch A, Rolain JM, Raoult D, Papazian L, Brégeon F.

Evaluation of the diagnostic value of fluorescent in situ hybridization in a rat model of bacterial pneumonia. Diagn Microbiol Infect Dis. 2013 Aug;76(4):425-31. doi: 10.1016/j.diagmicrobio.2013.04.028. Epub 2013 Jun 7. PubMed PMID: 23747031. 111: Singh S, Kowalczewska M, Edouard S, Eldin C, Perreal C, Weber P, Azza S,

Raoult D. Cell extract-containing medium for culture of intracellular fastidious bacteria. J Clin Microbiol. 2013 Aug;51(8):2599-607. doi: 10.1128/JCM.00719-13. Epub 2013 Jun 5. PubMed

PMID: 23740722; PubMed Central PMCID: PMC3719666. 112: Raoult D. Pig-related infections. Clin Microbiol Infect. 2013 Jul;19(7):585. doi: 10.1111/1469-0691.12258. PubMed PMID: 23738655. 113: Pfleiderer A, Lagier JC, Armougom F, Robert C, Vialettes B, Raoult D.

Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample. Eur J Clin Microbiol Infect Dis. 2013 Nov;32(11):1471-81. doi: 10.1007/s10096-013-1900-2. Epub 2013 Jun 2. PubMed PMID: 23728738. 114: Raoult D. Digestive microbiota and its influence on health: facts and myths. Microb Pathog. 2013 Aug-Sep;61-62:A1. doi: 10.1016/j.micpath.2013.05.008. Epub 2013 May 27. PubMed PMID: 23722049.

115: Saadi H, Pagnier I, Colson P, Cherif JK, Beji M, Boughalmi M, Azza S, Armstrong N, Robert C,

Fournous G, La Scola B, Raoult D. First isolation of Mimivirus in a patient with pneumonia. Clin Infect Dis. 2013 Aug;57(4):e127-34. doi: 10.1093/cid/cit354. Epub 2013 May 24. PubMed PMID: 23709652. 116: Yutin N, Raoult D, Koonin EV. Virophages, polintons, and transpovirons: a complex

evolutionary network of diverse selfish genetic elements with different reproduction strategies. Virol J. 2013 May 23;10:158. doi: 10.1186/1743-422X-10-158. PubMed PMID: 23701946; PubMed Central PMCID: PMC3671162. 117: Chambers ST, Murdoch D, Morris A, Holland D, Pappas P, Almela M, Fernández-Hidalgo N, Almirante B, Bouza E, Forno D, del Rio A, Hannan MM, Harkness J, Kanafani ZA, Lalani T, Lang S,

Raymond N, Read K, Vinogradova T, Woods CW, Wray D, Corey GR, Chu VH; International Collaboration on Endocarditis Prospective Cohort Study Investigators. HACEK infective endocarditis: characteristics and outcomes from a large, multi-national cohort. PLoS One. 2013 May 17;8(5):e63181. doi: 10.1371/journal.pone.0063181. Print 2013. PubMed PMID: 23690995; PubMed Central PMCID: PMC3656887.

118: Colson P, Fancello L, Gimenez G, Armougom F, Desnues C, Fournous G, Yoosuf N, Million M,

La Scola B, Raoult D. Evidence of the megavirome in humans. J Clin Virol. 2013 Jul;57(3):191-200. doi: 10.1016/j.jcv.2013.03.018. Epub 2013 May 8. PubMed PMID: 23664726. 119: Boutellis A, Mediannikov O, Bilcha KD, Ali J, Campelo D, Barker SC, Raoult D. Borrelia recurrentis in head lice, Ethiopia. Emerg Infect Dis. 2013 May;19(5):796-8. doi: 10.3201/eid1905.121480. PubMed PMID: 23648147; PubMed Central PMCID: PMC3647509.

120: Bousbia S, Raoult D, La Scola B. Pneumonia pathogen detection and microbial interactions in polymicrobial episodes. Future Microbiol. 2013 May;8(5):633-60. doi: 10.2217/fmb.13.26. Review. PubMed PMID: 23642118.


23/30

121: Seng P, Abat C, Rolain JM, Colson P, Lagier JC, Gouriet F, Fournier PE, Drancourt M, La Scola B, Raoult D. Identification of rare pathogenic bacteria in a clinical microbiology laboratory: impact

of matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol. 2013 Jul;51(7):2182-94. doi: 10.1128/JCM.00492-13. Epub 2013 May 1. PubMed PMID: 23637301; PubMed Central PMCID: PMC3697718.

122: Khelaifia S, Raoult D, Drancourt M. A versatile medium for cultivating methanogenic archaea. PLoS One. 2013 Apr 17;8(4):e61563. doi: 10.1371/journal.pone.0061563. Print 2013. PubMed PMID: 23613876; PubMed Central PMCID: PMC3629087. 123: Rolain JM, Vayssier-Taussat M, Saisongkorh W, Merhej V, Gimenez G, Robert C, Le Rhun D, Dehio C, Raoult D. Partial disruption of translational and posttranslational machinery reshapes growth rates of Bartonella birtlesii. MBio. 2013 Apr 23;4(2):e00115-13. doi: 10.1128/mBio.00115-

13. PubMed PMID: 23611908; PubMed Central PMCID: PMC3638310. 124: Boutellis A, Veracx A, Abrahão J, Raoult D. Amazonian head lice-specific genotypes are putatively pre-Columbian. Am J Trop Med Hyg. 2013 Jun;88(6):1180-4. doi: 10.4269/ajtmh.12-0766. Epub 2013 Apr 22. PubMed PMID: 23610158; PubMed Central PMCID: PMC3752820.

125: Sekeyová Z, Socolovschi C, Spitalská E, Kocianová E, Boldiš V, Diaz MQ, Berthová L,

Bohácsová M, Valáriková J, Fournier PE, Raoult D. Update on rickettsioses in Slovakia. Acta Virol. 2013;57(2):180-99. Review. PubMed PMID: 23600876. 126: Gaia M, Pagnier I, Campocasso A, Fournous G, Raoult D, La Scola B. Broad spectrum of mimiviridae virophage allows its isolation using a Mimivirus reporter. PLoS One. 2013 Apr 15;8(4):e61912. doi: 10.1371/journal.pone.0061912. Print 2013. PubMed PMID: 23596530;

PubMed Central PMCID: PMC3626643. 127: Cayrou C, Sambe B, Armougom F, Raoult D, Drancourt M. Molecular diversity of the Planctomycetes in the human gut microbiota in France and Senegal. APMIS. 2013 Nov;121(11):1082-90. doi: 10.1111/apm.12087. Epub 2013 Apr 18. PubMed PMID: 23594317. 128: Saby L, Laas O, Habib G, Cammilleri S, Mancini J, Tessonnier L, Casalta JP, Gouriet F, Riberi

A, Avierinos JF, Collart F, Mundler O, Raoult D, Thuny F. Positron emission tomography/computed tomography for diagnosis of prosthetic valve endocarditis: increased valvular 18F-

fluorodeoxyglucose uptake as a novel major criterion. J Am Coll Cardiol. 2013 Jun 11;61(23):2374-82. doi: 10.1016/j.jacc.2013.01.092. Epub 2013 Apr 10. PubMed PMID: 23583251. 129: Khelaifia S, Brunel JM, Raoult D, Drancourt M. Hydrophobicity of imidazole derivatives correlates with improved activity against human methanogenic archaea. Int J Antimicrob Agents.

2013 Jun;41(6):544-7. doi: 10.1016/j.ijantimicag.2013.02.013. Epub 2013 Apr 3. PubMed PMID: 23561316. 130: Yutin N, Colson P, Raoult D, Koonin EV. Mimiviridae: clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family. Virol J. 2013 Apr 4;10:106. doi: 10.1186/1743-422X-10-106. PubMed PMID: 23557328; PubMed

Central PMCID: PMC3620924. 131: Gouba N, Raoult D, Drancourt M. Plant and fungal diversity in gut microbiota as revealed by molecular and culture investigations. PLoS One. 2013;8(3):e59474. doi: 10.1371/journal.pone.0059474. Epub 2013 Mar 15. PubMed PMID: 23555039; PubMed Central PMCID: PMC3598745.

132: Djiba ML, Mediannikov O, Mbengue M, Thiongane Y, Molez JF, Seck MT, Fenollar F, Raoult D, Ndiaye M. Survey of Anaplasmataceae bacteria in sheep from Senegal. Trop Anim Health Prod. 2013 Oct;45(7):1557-61. doi: 10.1007/s11250-013-0399-y. Epub 2013 Apr 4. PubMed PMID: 23553260. 133: Million M, Walter G, Bardin N, Camoin L, Giorgi R, Bongrand P, Gouriet F, Casalta JP, Thuny F, Habib G, Raoult D. Immunoglobulin G anticardiolipin antibodies and progression to Q fever

endocarditis. Clin Infect Dis. 2013 Jul;57(1):57-64. doi: 10.1093/cid/cit191. Epub 2013 Mar 26. PubMed PMID: 23532474.


24/30

134: Gouriet F, Saby L, Delaunay E, Cammilleri S, le Dolley Y, Riberi A, Casalta JP, Habib G,

Raoult D. Incidental diagnosis of colonic tumor by PET/CT in infectious endocarditis. J Infect. 2013 Jul;67(1):88-90. doi:

10.1016/j.jinf.2013.03.004. Epub 2013 Mar 22. PubMed PMID: 23523828. 135: Chirouze C, Athan E, Alla F, Chu VH, Ralph Corey G, Selton-Suty C, Erpelding ML, Miro JM, Olaison L, Hoen B; International Collaboration on Endocarditis Study Group. Enterococcal

endocarditis in the beginning of the 21st century: analysis from the International Collaboration on Endocarditis-Prospective Cohort Study. Clin Microbiol Infect. 2013 Dec;19(12):1140-7. doi: 10.1111/1469-0691.12166. Epub 2013 Mar 20. PubMed PMID: 23517406. 136: Fenollar F, Lagier JC, Rolain JM, Célard M, Bouchot O, Eicher JC, Lepidi H, Raoult D. Tropheryma whipplei endocarditis relapses after treatment with trimethoprim/sulfamethoxazole.

Int J Antimicrob Agents. 2013 Jun;41(6):592-4. doi: 10.1016/j.ijantimicag.2013.02.003. Epub 2013 Mar 15. PubMed PMID: 23507410. 137: Raoult D. It is about time physicians and clinical microbiologists in infectious diseases investigated the aetiology of obesity. Clin Microbiol Infect. 2013 Apr;19(4):303-4. doi:

10.1111/1469-0691.12139. PubMed PMID: 23506524.

138: Ratmanov P, Mediannikov O, Raoult D. Vectorborne diseases in West Africa: geographic distribution and geospatial characteristics. Trans R Soc Trop Med Hyg. 2013 May;107(5):273-84. doi: 10.1093/trstmh/trt020. Epub 2013 Mar 10. Review. PubMed PMID: 23479360. 139: Bousbia S, Papazian L, Saux P, Forel JM, Auffray JP, Martin C, Raoult D, La Scola B. Serologic prevalence of amoeba-associated microorganisms in intensive care unit pneumonia patients. PLoS One. 2013;8(3):e58111. doi:n 10.1371/journal.pone.0058111. Epub 2013 Mar 1. PubMed PMID:

23469263; PubMed Central PMCID: PMC3585915. 140: Drali R, Boutellis A, Raoult D, Rolain JM, Brouqui P. Distinguishing body lice from head lice by multiplex real-time PCR analysis of the Phum_PHUM540560 gene. PLoS One. 2013;8(2):e58088. doi: 10.1371/journal.pone.0058088. Epub 2013 Feb 28. PubMed PMID: 23469145; PubMed Central PMCID: PMC3585238.

141: Edouard S, Parola P, Socolovschi C, Davoust B, La Scola B, Raoult D. Clustered cases of

Rickettsia sibirica mongolitimonae infection, France. Emerg Infect Dis. 2013 Feb;19(2):337-8. PubMed PMID: 23460995; PubMed Central PMCID: PMC3559049. 142: Million M, Angelakis E, Maraninchi M, Henry M, Giorgi R, Valero R, Vialettes B, Raoult D. Correlation between body mass index and gut concentrations of Lactobacillus reuteri,

Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli. Int J Obes (Lond). 2013 Nov;37(11):1460-6. doi: 10.1038/ijo.2013.20. Epub 2013 Mar 5. PubMed PMID: 23459324; PubMed CentralPMCID: PMC3826031. 143: Colson P, Gouriet F, Badiaga S, Tamalet C, Stein A, Raoult D. Real-time laboratory surveillance of sexually-transmissible infections in Marseille University hospitals reveals rise of

gonorrhoea, syphilis and human immunodeficiency virus seroconversions in 2012. Euro Surveill. 2013 Feb 14;18(7):4. PubMed PMID: 23449184. 144: Dubourg G, Lagier JC, Armougom F, Robert C, Hamad I, Brouqui P, Raoult D. The proof of concept that culturomics can be superior to metagenomics to study atypical stool samples. Eur J Clin Microbiol Infect Dis. 2013 Aug;32(8):1099. doi: 10.1007/s10096-013-1843-7. Epub 2013 Feb

21. PubMed PMID: 23430196.

145: Gouriet F, Bayle S, Le Dolley Y, Seng P, Cammilleri S, Stein A, Casalta JP, Habib G, Raoult D. Infectious endocarditis detected by PET/CT in a patient with a prosthetic knee infection: case report and review of the literature. Scand J Infect Dis. 2013 Jul;45(7):570-4. doi: 10.3109/00365548.2013.767472. Epub 2013 Feb 21. Review. PubMed PMID: 23427876. 146: Mediannikov O, Abdissa A, Socolovschi C, Diatta G, Trape JF, Raoult D. Detection of a new

Borrelia species in ticks taken from cattle in Southwest Ethiopia. Vector Borne Zoonotic Dis. 2013 Apr;13(4):266-9. doi: 10.1089/vbz.2011.0874. Epub 2013 Feb 19. PubMed PMID: 23421894.


25/30

147: Socolovschi C, Audoly G, Raoult D. Connection of toxin-antitoxin modules to inoculation

eschar and arthropod vertical transmission in Rickettsiales. Comp Immunol Microbiol Infect Dis. 2013 Mar;36(2):199-209. doi: 10.1016/j.cimid.2013.01.001. Epub 2013 Feb 13. PubMed PMID:

23414774. 148: Keita AK, Socolovschi C, Ahuka-Mundeke S, Ratmanov P, Butel C, Ayouba A, Inogwabini BI, Muyembe-Tamfum JJ, Mpoudi-Ngole E, Delaporte E, Peeters M, Fenollar F, Raoult D. Molecular

evidence for the presence of Rickettsia Felis in the feces of wild-living African apes. PLoS One. 2013;8(2):e54679. doi: 10.1371/journal.pone.0054679. Epub 2013 Feb 6. PubMed PMID: 23405087; PubMed Central PMCID: PMC3566102. 149: Grisoli D, Raoult D. Knowledge versus consensus: the endocarditis prophylaxis paradigm. Clin Microbiol Infect. 2013 Mar;19(3):207-8. doi: 10.1111/1469-0691.12121. Epub 2013 Feb 11.

PubMed PMID: 23398489. 150: Elbir H, Henry M, Diatta G, Mediannikov O, Sokhna C, Tall A, Socolovschi C, Cutler SJ, Bilcha KD, Ali J, Campelo D, Barker SC, Raoult D, Drancourt M. Multiplex real-time PCR diagnostic of relapsing fevers in Africa. PLoS Negl Trop Dis. 2013;7(1):e2042. doi:

10.1371/journal.pntd.0002042. Epub 2013 Jan 31. PubMed PMID: 23390560; PubMed Central PMCID: PMC3561136.

151: Slimani M, Pagnier I, Raoult D, La Scola B. Amoebae as battlefields for bacteria, giant viruses, and virophages. J Virol. 2013 Apr;87(8):4783-5. doi: 10.1128/JVI.02948-12. Epub 2013 Feb 6. PubMed PMID: 23388714; PubMed Central PMCID: PMC3624401. 152: Balique F, Colson P, Barry AO, Nappez C, Ferretti A, Moussawi KA, Ngounga T, Lepidi H, Ghigo

E, Mege JL, Lecoq H, Raoult D. Tobacco mosaic virus in the lungs of mice following intra-tracheal inoculation. PLoS One. 2013;8(1):e54993. doi: 10.1371/journal.pone.0054993. Epub 2013 Jan 30. PubMed PMID: 23383021; PubMed Central PMCID: PMC3559775. 153: Eldin C, Angelakis E, Renvoisé A, Raoult D. Coxiella burnetii DNA, but not viable bacteria, in dairy products in France. Am J Trop Med Hyg. 2013 Apr;88(4):765-9. doi: 10.4269/ajtmh.12-0212.

Epub 2013 Feb 4. PubMed PMID: 23382158; PubMed Central PMCID: PMC3617866.

154: Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C, Kianianmomeni A, Bürglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, Paponov I, Finkler A, Heng Tan CS, Hutchins AP, Weinmeier T, Rattei T, Chu JS, Gimenez G, Irimia M, Rigden DJ, Fitzpatrick DA, Lorenzo-Morales J, Bateman A, Chiu CH, Tang P, Hegemann P, Fromm H, Raoult D, Greub G, Miranda-Saavedra D, Chen N, Nash P, Ginger ML, Horn M, Schaap P, Caler L, Loftus

BJ. Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biol. 2013 Feb 1;14(2):R11. doi: 10.1186/gb-2013-14-2-r11. PubMed PMID: 23375108; PubMed Central PMCID: PMC4053784. 155: Thuny F, Gaubert JY, Jacquier A, Tessonnier L, Cammilleri S, Raoult D, Habib G. Imaging investigations in infective endocarditis: current approach and perspectives. Arch Cardiovasc Dis.

2013 Jan;106(1):52-62. doi: 10.1016/j.acvd.2012.09.004. Epub 2012 Dec 25. Review. PubMed PMID: 23374972. 156: Murillo N, Raoult D. Skin microbiota: overview and role in the skin diseases acne vulgaris and rosacea. Future Microbiol. 2013 Feb;8(2):209-22. doi: 10.2217/fmb.12.141. Review. PubMed PMID: 23374126.

157: Moos V, Feurle GE, Schinnerling K, Geelhaar A, Friebel J, Allers K, Moter A, Kikhney J, Loddenkemper C, Kühl AA, Erben U, Fenollar F, Raoult D, Schneider T. Immunopathology of immune reconstitution inflammatory syndrome in Whipple's disease. J Immunol. 2013 Mar 1;190(5):2354-61. doi: 10.4049/jimmunol.1202171. Epub 2013 Jan 30. PubMed PMID: 23365082. 158: Fournier PE, Gouriet F, Gimenez G, Robert C, Raoult D. Deciphering genomic virulence traits of a Staphylococcus epidermidis strain causing native-valve endocarditis. J Clin Microbiol. 2013 May;51(5):1617-21. doi: 10.1128/JCM.02820-12. Epub 2013 Jan 30. PubMed PMID: 23363834;

PubMed Central PMCID: PMC3647915.


26/30

159: Sokhna C, Mediannikov O, Fenollar F, Bassene H, Diatta G, Tall A, Trape JF, Drancourt M,

Raoult D. Point-of-care laboratory of pathogen diagnosis in rural Senegal. PLoS Negl Trop Dis. 2013;7(1):e1999. doi: 10.1371/journal.pntd.0001999. Epub 2013 Jan 17. PubMed PMID:

23350001; PubMed Central PMCID: PMC3547848. 160: Wetzstein N, Fenollar F, Buffet S, Moos V, Schneider T, Raoult D. Tropheryma whipplei genotypes 1 and 3, Central Europe. Emerg Infect Dis. 2013 Feb;19(2):341-2. doi:

10.3201/eid1902.120709. PubMed PMID: 23347594; PubMed Central PMCID: PMC3559045. 161: Million M, Raoult D. Species and strain specificity of Lactobacillus probiotics effect on weight regulation. Microb Pathog. 2013 Feb;55:52-4. doi: 10.1016/j.micpath.2012.09.013. PubMed PMID: 23332210.

162: Golesi F, Brignatz J, Bellenfant M, Raoult D, Drancourt M. Mycobacterium tuberculosis Beijing outbreak in a school in Marseille, France, 2012. Euro Surveill. 2013 Jan 10;18(2). pii: 20354. PubMed PMID: 23324426. 163: Boughalmi M, Saadi H, Pagnier I, Colson P, Fournous G, Raoult D, La Scola B. High-

throughput isolation of giant viruses of the Mimiviridae and Marseilleviridae families in the Tunisian environment. Environ Microbiol. 2013 Jul;15(7):2000-7. doi: 10.1111/1462-2920.12068. Epub

2013 Jan 9. PubMed PMID: 23298151. 164: Dubourg G, Lagier JC, Armougom F, Robert C, Audoly G, Papazian L, Raoult D. High-level colonisation of the human gut by Verrucomicrobia following broad-spectrum antibiotic treatment. Int J Antimicrob Agents. 2013 Feb;41(2):149-55. doi: 10.1016/j.ijantimicag.2012.10.012. Epub 2013 Jan 5. PubMed PMID: 23294932.

165: Dubourg G, Lagier JC, Armougom F, Robert C, Hamad I, Brouqui P, Raoult D. The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics. Eur J Clin Microbiol Infect Dis. 2013 May;32(5):637-45. doi: 10.1007/s10096-012-1787-3. Epub 2013 Jan 6. PubMed PMID: 23291779. 166: Yelnik C, Cousens R, Raoult D. CMI Editorial Report 2013. Clin Microbiol Infect. 2013

Jan;19(1):1-7. doi: 10.1111/1469-0691.12065. PubMed PMID: 23279285.

167: Million M, Angelakis E, Drissi F, Raoult D. Occam's razor and probiotics activity on Listeria monocytogenes. Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):E1. doi: 10.1073/pnas.1218418110. Epub 2012 Dec 27. PubMed PMID: 23271812; PubMed Central PMCID: PMC3538255.

168: Keita AK, Raoult D, Fenollar F. Tropheryma whipplei as a commensal bacterium. Future Microbiol. 2013 Jan;8(1):57-71. doi: 10.2217/fmb.12.124. Review. PubMed PMID: 23252493. 169: Keita AK, Mediannikov O, Ratmanov P, Diatta G, Bassene H, Roucher C, Tall A, Sokhna C, Trape JF, Raoult D, Fenollar F. Looking for Tropheryma whipplei source and reservoir in rural Senegal. Am J Trop Med Hyg. 2013 Feb;88(2):339-43. doi: 10.4269/ajtmh.2012.12-0614. Epub

2012 Dec 18. PubMed PMID: 23249690; PubMed Central PMCID: PMC3583327. 170: Yssouf A, Flaudrops C, Drali R, Kernif T, Socolovschi C, Berenger JM, Raoult D, Parola P. Matrix-assisted laser desorption ionization-time of flight mass spectrometry for rapid identification of tick vectors. J Clin Microbiol. 2013 Feb;51(2):522-8. doi: 10.1128/JCM.02665-12. Epub 2012

Dec 5. PubMed PMID: 23224087; PubMed Central PMCID: PMC3553915.

171: Lamas Cda C, Ramos RG, Lopes GQ, Santos MS, Golebiovski WF, Weksler C, Ferraiuoli GI, Fournier PE, Lepidi H, Raoult D. Bartonella and Coxiella infective endocarditis in Brazil: molecular evidence from excised valves from a cardiac surgery referral center in Rio de Janeiro, Brazil, 1998 to 2009. Int J Infect Dis. 2013 Jan;17(1):e65-6. doi: 10.1016/j.ijid.2012.10.009. Epub 2012 Dec 3. PubMed PMID: 23219032.

172: Ratmanov P, Bassene H, Fenollar F, Tall A, Sokhna C, Raoult D, Mediannikov O. The Correlation of Q fever and Coxiella burnetii DNA in household environments in rural Senegal. Vector Borne Zoonotic Dis. 2013 Jan;13(1):70-2. doi: 10.1089/vbz.2012.1060. Epub 2012 Nov 30. PubMed PMID: 23199274.


27/30

173: Colson P, Pagnier I, Yoosuf N, Fournous G, La Scola B, Raoult D. "Marseilleviridae", a new family of giant viruses infecting amoebae. Arch Virol. 2013 Apr;158(4):915-20. doi:

10.1007/s00705-012-1537-y. Epub 2012 Nov 29. PubMed PMID: 23188494. 174: Singh S, Eldin C, Kowalczewska M, Raoult D. Axenic culture of fastidious and intracellular bacteria. Trends Microbiol. 2013 Feb;21(2):92-9. doi: 10.1016/j.tim.2012.10.007. Epub 2012 Nov

23. Review. PubMed PMID: 23182864. 175: Cautela J, Alessandrini S, Cammilleri S, Giorgi R, Richet H, Casalta JP, Habib G, Raoult D, Mundler O, Deharo JC. Diagnostic yield of FDG positron-emission tomography/computed tomography in patients with CEID infection: a pilot study. Europace. 2013 Feb;15(2):252-7. doi: 10.1093/europace/eus335. Epub 2012 Nov 12. PubMed PMID: 23148119.

176: Bonnave PE, Raoult D, Drancourt M. Gastric aspiration is not necessary for the diagnosis of pulmonary tuberculosis. Eur J Clin Microbiol Infect Dis. 2013 Apr;32(4):569-71. doi: 10.1007/s10096-012-1776-6. Epub 2012 Nov 11. PubMed PMID: 23143083.

177: Mangot-Bertrand J, Fenollar F, Bretelle F, Gamerre M, Raoult D, Courbiere B. Molecular diagnosis of bacterial vaginosis: impact on IVF outcome. Eur J Clin Microbiol Infect Dis.

2013 Apr;32(4):535-41. doi: 10.1007/s10096-012-1770-z. Epub 2012 Nov 7. PubMed PMID: 23132689. 178: Million M, Raoult D. The role of the manipulation of the gut microbiota in obesity. Curr Infect Dis Rep. 2013 Feb;15(1):25-30. doi: 10.1007/s11908-012-0301-5. PubMed PMID: 23129415.

179: Loyens M, Thuny F, Grisoli D, Fournier PE, Casalta JP, Vitte J, Habib G, Raoult D. Link between endocarditis on porcine bioprosthetic valves and allergy to pork. Int J Cardiol. 2013 Jul 31;167(2):600-2. doi: 10.1016/j.ijcard.2012.09.233. Epub 2012 Oct 31. PubMed PMID: 23121916. 180: Benkouiten S, Badiaga S, Nappez C, Charrel R, Raoult D, Brouqui P. Immunity to measles, diphtheria and tetanus in residents of homeless shelters in Marseilles, France. J Infect. 2013 Feb;66(2):189-91. doi: 10.1016/j.jinf.2012.10.023. Epub 2012 Oct 26. PubMed PMID: 23103286.

181: Diene SM, Fall B, Kempf M, Fenollar F, Sow K, Niang B, Wade B, Raoult D, Rolain JM.

Emergence of the OXA-23 carbapenemase-encoding gene in multidrug-resistant Acinetobacter baumannii clinical isolates from the Principal Hospital of Dakar, Senegal. Int J Infect Dis. 2013 Mar;17(3):e209-10. doi: 10.1016/j.ijid.2012.09.007. Epub 2012 Oct 22. PubMed PMID: 23084970. 182: Tande AJ, Cunningham SA, Raoult D, Sim FH, Berbari EF, Patel R. A case of Q fever

prosthetic joint infection and description of an assay for detection of Coxiella burnetii. J Clin Microbiol. 2013 Jan;51(1):66-9. doi: 10.1128/JCM.02352-12. Epub 2012 Oct 17. PubMed PMID: 23077126; PubMed Central PMCID: PMC3536193. 183: Barsic B, Dickerman S, Krajinovic V, Pappas P, Altclas J, Carosi G, Casabé JH, Chu VH, Delahaye F, Edathodu J, Fortes CQ, Olaison L, Pangercic A, Patel M, Rudez I, Tamin SS, Vincelj J,

Bayer AS, Wang A; International Collaboration on Endocarditis–Prospective Cohort Study Investigators. Influence of the timing of cardiac surgery on the outcome of patients with infective endocarditis andnstroke. Clin Infect Dis. 2013 Jan;56(2):209-17. doi: 10.1093/cid/cis878. Epub 2012 Oct 16. PubMed PMID: 23074311. 184: Diene SM, Merhej V, Henry M, El Filali A, Roux V, Robert C, Azza S, Gavory F, Barbe V, La

Scola B, Raoult D, Rolain JM. The rhizome of the multidrug-resistant Enterobacter aerogenes

genome reveals how new "killer bugs" are created because of a sympatric lifestyle. Mol Biol Evol. 2013 Feb;30(2):369-83. doi: 10.1093/molbev/mss236. Epub 2012 Oct 15. PubMed PMID: 23071100. 185: Rolain JM, Diene SM, Kempf M, Gimenez G, Robert C, Raoult D. Real-time sequencing to decipher the molecular mechanism of resistance of a clinical pan-drug-resistant Acinetobacter baumannii isolate from Marseille, France. Antimicrob Agents Chemother. 2013 Jan;57(1):592-6.

doi: 10.1128/AAC.01314-12. Epub 2012 Oct 15. PubMed PMID: 23070160; PubMed Central PMCID: PMC3535948.


28/30

186: Botelho-Nevers E, Singh S, Chiche L, Raoult D. Effect of omeprazole on vacuole size in

Coxiella burnetii-infected cells. J Infect. 2013 Mar;66(3):288-9. doi: 10.1016/j.jinf.2012.10.006. Epub 2012 Oct 13. PubMed PMID: 23068453.

187: Mediannikov O, Fenollar F, Bassene H, Tall A, Sokhna C, Trape JF, Raoult D. Description of "yaaf", the vesicular fever caused by acute Rickettsia felis infection in Senegal. J Infect. 2013 Jun;66(6):536-40. doi: 10.1016/j.jinf.2012.10.005. Epub 2012 Oct 13. PubMed PMID: 23068450.

188: Angelakis E, Million M, D'Amato F, Rouli L, Richet H, Stein A, Rolain JM, Raoult D. Q fever and pregnancy: disease, prevention, and strain specificity. Eur J Clin Microbiol Infect Dis. 2013 Mar;32(3):361-8. doi: 10.1007/s10096-012-1750-3. Epub 2012 Sep 28. PubMed PMID: 23052984. 189: Herremans T, Hogema BM, Nabuurs M, Peeters M, Wegdam-Blans M, Schneeberger P, Nijhuis

C, Notermans DW, Galama J, Horrevorts A, van Loo IH, Vlaminckx B, Zaaijer HL, Koopmans MP, Berkhout H, Socolovschi C, Raoult D, Stenos J, Nicholson W, Bijlmer H. Comparison of the performance of IFA, CFA, and ELISA assays for the serodiagnosis of acute Q fever by quality assessment. Diagn Microbiol Infect Dis. 2013 Jan;75(1):16-21. doi: 10.1016/j.diagmicrobio.2012.09.001. Epub 2012 Oct 5. PubMed PMID: 23041450.

190: Raoult D, Mouffok N, Bitam I, Piarroux R, Drancourt M. Plague: history and contemporary

analysis. J Infect. 2013 Jan;66(1):18-26. doi: 10.1016/j.jinf.2012.09.010. Epub 2012 Oct 3. Review. PubMed PMID: 23041039. 191: Vu Hai V, Almeras L, Audebert S, Pophillat M, Boulanger N, Parola P, Raoult D, Pages F. Identification of salivary antigenic markers discriminating host exposition between two European ticks: Rhipicephalus sanguineus and Dermacentor reticulatus. Comp Immunol Microbiol Infect Dis.

2013 Jan;36(1):39-53. doi: 10.1016/j.cimid.2012.09.003. Epub 2012 Oct 4. PubMed PMID: 23040662. 192: Fancello L, Trape S, Robert C, Boyer M, Popgeorgiev N, Raoult D, Desnues C. Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara. ISME J. 2013 Feb;7(2):359-69. doi: 10.1038/ismej.2012.101. Epub 2012 Oct 4. PubMed PMID: 23038177; PubMed Central PMCID: PMC3554411.

193: Kempf M, Rolain JM, Azza S, Diene S, Joly-Guillou ML, Dubourg G, Colson P, Papazian L,

Richet H, Fournier PE, Ribeiro A, Raoult D. Investigation of Acinetobacter baumannii resistance to carbapenems in Marseille hospitals, south of France: a transition from an epidemic to an endemic situation. APMIS. 2013 Jan;121(1):64-71. doi: 10.1111/j.1600-0463.2012.02935.x. Epub 2012 Jun 28. PubMed PMID: 23030740.

194: Wolcott R, Costerton JW, Raoult D, Cutler SJ. The polymicrobial nature of biofilm infection. Clin Microbiol Infect. 2013 Feb;19(2):107-12. doi: 10.1111/j.1469-0691.2012.04001.x. Epub 2012 Aug 27. Review. PubMed PMID: 22925473. 195: Keita AK, Brouqui P, Badiaga S, Benkouiten S, Ratmanov P, Raoult D, Fenollar F. Tropheryma whipplei prevalence strongly suggests human transmission in homeless shelters. Int

J Infect Dis. 2013 Jan;17(1):e67-8. doi: 10.1016/j.ijid.2012.05.1033. Epub 2012 Jul 12. PubMed PMID: 22795221. 196: Thuny F, Hubert S, Tribouilloy C, Le Dolley Y, Casalta JP, Riberi A, Chevalier F, Rusinaru D, Malaquin D, Remadi JP, Ammar AB, Avierinos JF, Collart F, Raoult D, Habib G. Sudden death in patients with infective endocarditis: findings from a large cohort study. Int J Cardiol. 2013 Jan

10;162(2):129-32. doi: 10.1016/j.ijcard.2012.06.059. Epub 2012 Jul 2. PubMed PMID: 22759277.


29/30

THESES de DOCTORAT ANNÉE 2013

NOM Sujet Date thèse

APPELT Sandra Paléomicrobiologie des microbiotes intestinaux 09/12/2013

BALIQUE Fanny Les virus de plantes dans les produits alimentaires et les prélèvements cliniques

10/07/2013

BERRAZEG Meryem Développement des nouveaux outils de surveillance de

l’émergence des bactéries à Gram négatif multirésistantes

03/06/2013

BOUCHERIT Nicolas Facteur de virulence du LPS de Coxiella Burnetii 02/12/2013

BOUGHALMI Mondher

Isolement à haut débit des virus géants et virophages

à partir de différentes niches écologiques et micro niches animales.

12/12/2013

BOUTELLIS Amina ETUDE DES VARIATIONS PHENOTYPIQUES ET GENOTYPIQUES DES POUX DE TETE ET DES POUX DE

CORPS DE L'HOMME

09/09/2013

DJEGHADER Ahmed Etude des protéines DING 26/11/2013

ELKAOUTARI

Abdessamad

Exploration des enzymes du microbiome intestinal

humain impliquées dans la digestion des sucres complexes

06/12/2013

FANCELO Laura Métagenomique virale des pathologies sans agent étiologique connu.

01/10/2013

GAIA Morgan Les virophages de Mimiviridae 10/12/2013

GHODBANE Ramzi Culture des mycobactéries 26/11/2013

GHOTTARD Guillaume Etude des PTE hyperthermostables 29/10/2013

GORVEL Laurent Interaction cellules et pathogènes interacellulaire 12/12/2013

GOUBA Nina Molecular identification and pathogenic amoeba and

related organism 09/12/2013

HIBLOT Julien

Amélioration rationalisée de l’enzyme

hyperthermostable SsoPox. Perspectives de développement d’un bio-décontaminant d’organophosphorés et d’un agent anti-virulence bactérienne.

13/06/2013

KEITA Alpha Épidémiologie de Tropheryma whipplei 08/10/2013

KERNIF TAHAR Etudes des relations Puces et Bactéries en Zone

Méditerranéenne et Tropicale: Épidémiologie moléculaire et modèles Expérimentaux

14/01/2013

KHELAIFIA Saber Les archaea 07/06/2013

LAGIER Jean-Christophe Diversité du microbiote digestif humain par

culturomics et pyroséquençage 15/05/2013

LE Thi Phuong Transferts horizontaux de gènes chez les alpha-

proteobacteria 14/03/2013

MATHEW Mano Joseph Bacterial evolution and genomic 19/12/2013

MERAJH Vikram Analyse transinformique des malades atteints de

fièvre Q. "A transcriptional approach to define new biomarkers : Application to Q fever"

07/05/2013

MILLION MATHIEU Caractérisation des altérations du microbiote digestif associées à l'obésité et rôle de la manipulation du

microbiote digestif dans l'obésité

15/05/2013


30/30

MUHAMMED AMEEN Sirwan

Phenotypic characterization of mycobacterium tuberculosis

26/11/2013

MURILLO Nathalia Microbiote du Demodex associé à la rosacée 18/12/2013

OUEDRAOGO Richard Activation de monocytes macrophages en

spectrométrie de masse 02/12/2013

SAADI/BOUGHALMI

Hamene

Isolements à hauts débits, identification moléculaire

des virus géants et virophages isolés chez les patients Tunisiens atteints de pneumopathies

12/12/2013

SASSI Mohamed Identification et isolement d'un bactériovirophage 25/09/2013

SENG PISETH Application de la spectrométrie de masse (MALDI-

TOF) en microbiologie clinique 09/07/2013

SENTAUSA Erwin Génomique comparative intraspécifique de Rickettsia 13/12/2013

SHARMA POONAM Study of the respiratory microbiota in patients with

cystic fibrosis 19/12/2013

SLIMANI Meriem Identification des bactéries responsables d'infections

urinaires par spectrométrie de masse 24/09/2013

VU HAI Vinh Salivary antigenic proteins from Ixodidae and Anopheles: a novel tool for vector-borne diseases

monitoring

19/11/2013

NIYAZ YOOSUF Génomes de Mimiviruses de Amoeba 10/12/2013

UNITE DE RECHERCHE - medecine.univ-amu.fr · THEMATIQUE : interactions hôte-pathogènes durant la...

Documents

Transcript of UNITE DE RECHERCHE - medecine.univ-amu.fr · THEMATIQUE : interactions hôte-pathogènes durant la...