Serveur terminologique inter-lingue : vers des ... · Microbiologie - Pôle Biologie) Unité de...

Serveur terminologique inter-lingue

vers des applications pratiques

Stefan J Darmoni MD PhD

TIBS LITIS Lab

Rouen University Hospital amp Rouen Medical School Normandy University France

LIMICS INSERM U1142

Email StefanDarmonichu-rouenfr

2016 ndash SIBM - Rouen University Hospital

Master M2IBM ndash Lina Soualmia amp Catherine Duclos ndash LIMampBio UFR SMBH Paris XIII

Pocircle de Santeacute Publique JF Gehanno V Mangot MH Roux

Enseignement et recherche (sous-

section CNU 46-02)

Enseignement et recherche (sous-section CNU 46-04)


JF Gehanno

SJ Darmoni

J Benichou

J Ladner

I Mareacutechal

V Merle

Deacutepartement de santeacute au travail et

pathologie professionnelle

(DSTPF)

Deacutepartement drsquoinformation et drsquoinformatique

meacutedicales (DIIM)

Deacutepartement drsquoappui agrave la

recherche clinique (DARC)

Deacutepartement de santeacute publique et

eacutepideacutemiologie (DSPE)

Deacutepartement

drsquoappui agrave la qualiteacute et agrave la seacutecuriteacute des

soins (DAQSS)

Deacutepartement

drsquohygiegravene hospitaliegravere (DHH)

Uniteacute de santeacute au travail des personnels hospitaliers

(USTPH)

Uniteacute drsquoinformation meacutedicale (UIM 1)

Centre drsquoinvestigation clinique (CIC)

Uniteacute de santeacute

publique et drsquoeacutepideacutemiologie clinique (USPEC)

Uniteacute de preacutevention des risques associeacutes aux soins (UPRAS)

Uniteacute de preacutevention des infections

nosocomiales (UPIN)

Uniteacute de pathologie professionnelle

(UPF)

Uniteacute drsquoinformatique

meacutedicale (UIM 2)

Centre de ressources biologiques (CRB)

Uniteacute transversale drsquoeacuteducation

theacuterapeutique du Patient (UTEP)

Uniteacute de seacutecuriteacute

transfusionnelle et heacutemovigilance

(USTH)

Laboratoire drsquohygiegravene

hospitaliegravere (LHH)

(Deacutepartement Microbiologie - Pocircle

Biologie)

Uniteacute de biostatistiques (UB)

Coordination des vigilances sanitaires

(CVS)

(+ activiteacute drsquoidentito-vigilance)

SIBM 2016 Department of Biomedical Informatics

MDs Engineers University Librarians Secretaries

Steacutefan DARMONI

(Prof) head Badisse DAHAMNA

Lina Soualmia (Senior

lecturer computer

science)

Benoit THIRION (Head

of the Medical Library)

Annie-Claude

LANCELEVEE

Jean-Philippe LEROY Ivan KERGOURLAY Chloeacute CABOT (PhD

student)

Catherine LETORD

(Pharmacist librarian) Sandrine VOURIOT

Nicolas GRIFFON

Julien GROSJEAN

(PostDoc)

Wiem CHEBIL (PhD

student) Gaeacutetan KERDELHUE

(librarian)

Matthieu SCHUERS

(GP PhD student)

Romain LELONG (PhD

student)

Melissa Mary (PhD

student Grant CIFRE

BioMeacuterieux)

Leacutea SEGAS (librarian)

2 residents in Public

Health

1 ou 2 residents in GP

Philippe MASSARI

(retired)

Financement CHU

Financement Universiteacute Rouen

Financement Conseil

Reacutegional Normandie Financement sur projets

de recherche

HeTOP content

2016 - CISMeF - Rouen University Hospital

- HeTOP is a repository dedicated to (European) health professionals and

students URL wwwhetopeu version NoSQL (beta-test) cisprochu-

rouenfrhetop

-HeTOP provides access to 69 health terminologies and ontology (TO)

available mainly in French or in English but also German Italian and

Dutch (European languages) but also with no Latin alphabet (Greek

Russian) and more recently outside Europe (Japanese Mandarin Arabic

amp Hebrew) (32 different languages)

- HeTOP can be used by humans and by computers via Web services

- The main objective of HeTOP is to provide an access to terminologies

and ontology allowing dynamic browsing and navigation

bull Free portal for over 20 TO eg MeSH CISMeF ICD10 amp CCAM

extended access restricted by IDpwd for academic use only

bull To be included next (Lausanne collaboration) extended ICD10 +

CHOP

HeTOP content


- HeTOP provides the usual data for each concept preferred terms

original code synonyms definitions and other attributes relations and

hierarchies

- Double (matricial) navigation

- among TO

- among languages

- Time consuming task gt 20 man-years (to develop) + 2 man-years per

year to maintain (integration amp maintenance of TO + mappings)

- Time consuming task to translate terminologies +++

- Several services on demand

- access to other resources on the Internet (PubMed CISMeF etc)

through a French InfoButton (InfoRoute)

- access to mappings tools (integrated in a beta version)

- acces to automatic indexing tool (ECMT)

Methods


To integrate terminologies and ontology into EHTOP

three steps are necessary

(1) designing a meta-model into which each terminology

and ontology can be integrated

(2) developing a process to include terminologies into

EHTOP

(3) building and integrating existing and new inter amp

intra-terminology semantic harmonization into EHTOP

HeTOP generic model

7

Compliant with

ISO Terminology model

More simple

Validation

Ontology tools

Integration OWL instances

Raw data

DB

Parsers

Model

OWL instance

Format


Methods amp technologies (1)

HeTOP

db

Application server

(Apache Tomcat)

Clients

EHTOP

service


PTS

db

bull Oracle 111g (optimizations amp partitionning) =gt

NoSQL in 2015

HeTOP

service

bull Java J2EE

bull CISMeF APIs

bull Apache Tomcat

bull Infinispan cache layer

bull Cross-browser (Vaadin framework)

=gt new framework in 2016 (INSA Rouen Engineering

School)

Croslingual Health Multi-

TerminologyOntology Portal

First version before HeTOP (French amp English)

URL httpptschu-rouenfr

Access for humans and coumputers (Web services)

Since September 2010 daily used by CISMeF team to index manually and

automatically Web resources

Since January 2011 MeSH is freely available (500 unique users per

working day)

Teaching tool Rouen Medical School (since Sept 2010) to teach anatomy

and rare diseases

Terminology auditing HPOOrphanet

TO translations into French FMA HPO SNOMED CT MEDLINEplus

Restricted access to the other terminologies (2250 registred)

Cooperation with BioPortal Clement Jonquet amp Mark Musen (ANR

Jeunes Chercheurs project SIFR)

11






Three main terminology servers

in health

UMLS NIH Bethesda (USA)

Plus de 150 TO

Essentiellement en anglais

La reacutefeacuterence internationale pour la diffusion mais pas pour la consultation

BioPortal NCBO Stanford (USA)

Plus de 400 T0 (beaucoup en biologie avec peu de concepts)

Essentiellement en anglais (silo pour les autres langues)

La reacutefeacuterence pour poster une ontologie

HeTOP SIBM Rouen (France)

70 T0 en 32 langues

La reacutefeacuterence inter-lingue (navigation entre les langues) et dans le monde francophone

Grosjean J et coll An Approach to Compare Bio-Ontologies Portals Stud Health Technol

Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies

Concepts Synonymes Deacutefinitions Relations amp

hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010

Terminologies Concepts Synonymes Deacutefinitions Relations

32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013


45 asymp 1 620 000 asymp 3 700 000 asymp 220 000 asymp 5 500 000

February 2016

Terminologies Concepts

in English

Concepts

in French

Terms Attributes Relations

69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures

Registered users gt 2 600

traffic 15 000 hitsday (6 to 700 users per working day)


Terminologies in French AND

in UMLS (2015AA)

Source vocabulary

(Translator) [N lang]

Number of Strings

(PT + syn + acro)

Number of CUIs

( Translation in French)

MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP

Descriptors (INSERM) [16] 105274 27747 (100)

Supplementary Concepts

(CISMeF) [2]

58514 42693 (1824)

Concepts (INSERM amp

CISMeF) [2]

99184 94052 (2620)


Terminologies in UMLS NOT

in French

Source vocabulary


Number of Strings Number of CUIs

( of translation Fr)

ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)

ICDO Fr (WHO+CISMeF) [3] 1462 1362 (100)

ICF (WHO) [2] 1496 1495

FMA Fr (U of Washington) 4564 4452

FMA Fr in HeTOP (CISMeF) [7] 16631 16369 (2020)

ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)

SNOMED CT 126492 (4185) 20145- CISMeF - Rouen University Hospital


in French

Source vocabulary


Number of Strings

FrEn of tranlsations

Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240

LOINC (APHP amp SFIL)

[2]

58950 58500 (6071)

MEDLINEplus Fr

(CISMeF amp LIMSI) [2]

849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)


Terminologies in French that

are not included in UMLS

Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)

HRDO (Orphanet) [2] 13535id100 4943

HPO (CISMeF) [2] 11127119089344 1541

CCAM (procedure) [1] 10121 0

BNPC (toxicology) [2] 91751 11539

Q-Codes 184

hellip including interface

terminologies

in biology and imaging

Overall number of distinct CUI with at least one French translation in HeTOP

asymp 333239 vs asymp 88000 in UMLS (x379)

108 millions of RDF triplets (big data in health) in 2014

HeTOP relationships

(examples amp numbers)

21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP

UMLSalignment Myocardial Infarction

(MeSH)

Myocardial infarction

NOS

(SNOMED Int)

537978

CISMeFmanual Riedel thyroiditis

(HRDO)

Riedelrsquos thyroiditis

(MedDRA)

56265

CISMeFexact appetite

stimulants

(ATC)

Appetite stimulated

(WHOART)

653709

CISMeFSupervised Gonadotropin

releasing hormone

(MeSH)

Luteotropin-releasing

factor

(FMA)

286561

bull Formal representation of complex clinical data structures =

none

bull Formal representation of physiological models = none

bull Temporal relations = none

bull Data quality = based on T0 quality and point of view

bull Formalism amp reasoning capabilities = none

bull Collaborative editingsearchingsharing tools = collaboration

with BioPortal to share tools (Clement Jonquet)

bull TO versioning = not yet provided by HeTOP

bull Semantic resources distributiondissemination processes =

56 T0 avalable in OWL format (latest version)SKOSRDF in

several languages

HeTOP limits

Other tools integrated HeTOP

ECMT Extracteur de Concepts Multi Terminologiques

Able to extract health concepts from any text eg discharge summary in frac12 second

(NoSQL)

Valorization with Alicante SME

Used in daily practice in the Catholic University Hospital of Lille France Dr Arnaud

Hansske around one million discharge summaries indexed with ECMT

InfoRoute a French InfoButton

URL inforoutechu-rouenfr

Access to a contextualized knowledge based on semantic expansion based on

manual amp supevised mapping among terminologies

MTHeTOP tool to perform automatic mappings amp translations

Generic semantic search engine

DocrsquoCISMeF (URL doccismefchu-rouenfr) on grey literature about health in French

on the Internet (105 resources)

LISSA (URL wwwlissafr) a PubMed in French (07 x 106 citations drsquoarticles)

RIDOPI search engine in EHR (8 x 106 discharge summaries in Rouen around 109

health concepts in these summaries 108 numerical data in Rouen)

26


RI-BI - Lina Soualmia - Universiteacute de

Rouen

27

Metrics of ECMT (April 2015

CLEF eHealth in French)

28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518

Results obtained in 2015 and 2016 from the training

set (832 documents) provided by CLEF e-Health

2015indexed with ECMT

2015 participation in the CLEF e-Health challenge

(httpssitesgooglecomsiteclefehealth2015)

bull Addresses clinical named entity recognition in languages other than

English

2016 Deduplication of identical terms from multiples terminologies

Reevaluation in the 2016 CLEF e-Health challenge

Detailed 2016 results obtained from the training set

(832 documents) provided by CLEF e-Health

2015indexed wit

Disparities between UMLS semantic groups

ANAT (anatomy) DISO (disorders) ICD10 MeSH FMAhellip

OBJC (objects food) PHEN (natural environmental

phenomenon or process) few terminological resources

2016 Entity Recognition exact match Entity Recognition inexact match

TP FP FN Precision Recall F1 TP FP FN Precision Recall F1

ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855

Semantic harmonization

mapping alignment

Three methods employed

URL httpcisprochu-rouenfrMT_EHTOP

Conceptual Same CUI

Other relations close match BT-NT NT-BT (SKOS)

On UMLS (n=17 included in HeTOP)

NLP More or less same algorithm of automatic indexing

Bag of words

on n(n-1)2 TO (included in the HeTOP)

Statitistical Co-occurrnece matrix

CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words

Systegraveme drsquoinformation du SIBM

Donneacutees du dossier

patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de

reacutefeacuterences

bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques

Reacutefeacuterences drsquoarticles

scientifiques

francophones

N = 900 000

Ressources gratuites

francophones

N = 110 000

Terminologies de

santeacute

N = 68

23 millions concepts

Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016


Pocircle de Santeacute Publique JF Gehanno V Mangot MH Roux

Enseignement et recherche (sous-

section CNU 46-02)



JF Gehanno

SJ Darmoni

J Benichou

J Ladner

I Mareacutechal

V Merle

Deacutepartement de santeacute au travail et

pathologie professionnelle

(DSTPF)

Deacutepartement drsquoinformation et drsquoinformatique

meacutedicales (DIIM)

Deacutepartement drsquoappui agrave la

recherche clinique (DARC)

Deacutepartement de santeacute publique et

eacutepideacutemiologie (DSPE)

Deacutepartement

drsquoappui agrave la qualiteacute et agrave la seacutecuriteacute des

soins (DAQSS)

Deacutepartement

drsquohygiegravene hospitaliegravere (DHH)

Uniteacute de santeacute au travail des personnels hospitaliers

(USTPH)

Uniteacute drsquoinformation meacutedicale (UIM 1)

Centre drsquoinvestigation clinique (CIC)

Uniteacute de santeacute

publique et drsquoeacutepideacutemiologie clinique (USPEC)

Uniteacute de preacutevention des risques associeacutes aux soins (UPRAS)

Uniteacute de preacutevention des infections

nosocomiales (UPIN)

Uniteacute de pathologie professionnelle

(UPF)

Uniteacute drsquoinformatique

meacutedicale (UIM 2)

Centre de ressources biologiques (CRB)

Uniteacute transversale drsquoeacuteducation

theacuterapeutique du Patient (UTEP)

Uniteacute de seacutecuriteacute

transfusionnelle et heacutemovigilance

(USTH)

Laboratoire drsquohygiegravene

hospitaliegravere (LHH)

(Deacutepartement Microbiologie - Pocircle

Biologie)

Uniteacute de biostatistiques (UB)

Coordination des vigilances sanitaires

(CVS)

(+ activiteacute drsquoidentito-vigilance)



Steacutefan DARMONI



lecturer computer

science)



Annie-Claude

LANCELEVEE


student)

Catherine LETORD


Nicolas GRIFFON

Julien GROSJEAN

(PostDoc)

Wiem CHEBIL (PhD


(librarian)

Matthieu SCHUERS

(GP PhD student)

Romain LELONG (PhD

student)

Melissa Mary (PhD

student Grant CIFRE

BioMeacuterieux)



Health


Philippe MASSARI

(retired)

Financement CHU


Financement Conseil


de recherche

HeTOP content




rouenfrhetop












CHOP

HeTOP content




hierarchies


- among TO

- among languages









Methods







EHTOP



HeTOP generic model

7

Compliant with


More simple

Validation

Ontology tools


Raw data

DB

Parsers

Model

OWL instance

Format



HeTOP

db

Application server

(Apache Tomcat)

Clients

EHTOP

service


PTS

db


NoSQL in 2015

HeTOP

service

bull Java J2EE

bull CISMeF APIs

bull Apache Tomcat




School)









working day)


and rare diseases






11







in health


Plus de 150 TO








70 T0 en 32 langues



Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016



Steacutefan DARMONI



lecturer computer

science)



Annie-Claude

LANCELEVEE


student)

Catherine LETORD


Nicolas GRIFFON

Julien GROSJEAN

(PostDoc)

Wiem CHEBIL (PhD


(librarian)

Matthieu SCHUERS

(GP PhD student)

Romain LELONG (PhD

student)

Melissa Mary (PhD

student Grant CIFRE

BioMeacuterieux)



Health


Philippe MASSARI

(retired)

Financement CHU


Financement Conseil


de recherche

HeTOP content




rouenfrhetop












CHOP

HeTOP content




hierarchies


- among TO

- among languages









Methods







EHTOP



HeTOP generic model

7

Compliant with


More simple

Validation

Ontology tools


Raw data

DB

Parsers

Model

OWL instance

Format



HeTOP

db

Application server

(Apache Tomcat)

Clients

EHTOP

service


PTS

db


NoSQL in 2015

HeTOP

service

bull Java J2EE

bull CISMeF APIs

bull Apache Tomcat




School)









working day)


and rare diseases






11







in health


Plus de 150 TO








70 T0 en 32 langues



Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016

HeTOP content




rouenfrhetop












CHOP

HeTOP content




hierarchies


- among TO

- among languages









Methods







EHTOP



HeTOP generic model

7

Compliant with


More simple

Validation

Ontology tools


Raw data

DB

Parsers

Model

OWL instance

Format



HeTOP

db

Application server

(Apache Tomcat)

Clients

EHTOP

service


PTS

db


NoSQL in 2015

HeTOP

service

bull Java J2EE

bull CISMeF APIs

bull Apache Tomcat




School)









working day)


and rare diseases






11







in health


Plus de 150 TO








70 T0 en 32 langues



Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016

HeTOP content




hierarchies


- among TO

- among languages









Methods







EHTOP



HeTOP generic model

7

Compliant with


More simple

Validation

Ontology tools


Raw data

DB

Parsers

Model

OWL instance

Format



HeTOP

db

Application server

(Apache Tomcat)

Clients

EHTOP

service


PTS

db


NoSQL in 2015

HeTOP

service

bull Java J2EE

bull CISMeF APIs

bull Apache Tomcat




School)









working day)


and rare diseases






11







in health


Plus de 150 TO








70 T0 en 32 langues



Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016

Methods







EHTOP



HeTOP generic model

7

Compliant with


More simple

Validation

Ontology tools


Raw data

DB

Parsers

Model

OWL instance

Format



HeTOP

db

Application server

(Apache Tomcat)

Clients

EHTOP

service


PTS

db


NoSQL in 2015

HeTOP

service

bull Java J2EE

bull CISMeF APIs

bull Apache Tomcat




School)









working day)


and rare diseases






11







in health


Plus de 150 TO








70 T0 en 32 langues



Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016

HeTOP generic model

7

Compliant with


More simple

Validation

Ontology tools


Raw data

DB

Parsers

Model

OWL instance

Format



HeTOP

db

Application server

(Apache Tomcat)

Clients

EHTOP

service


PTS

db


NoSQL in 2015

HeTOP

service

bull Java J2EE

bull CISMeF APIs

bull Apache Tomcat




School)









working day)


and rare diseases






11







in health


Plus de 150 TO








70 T0 en 32 langues



Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016

Validation

Ontology tools


Raw data

DB

Parsers

Model

OWL instance

Format



HeTOP

db

Application server

(Apache Tomcat)

Clients

EHTOP

service


PTS

db


NoSQL in 2015

HeTOP

service

bull Java J2EE

bull CISMeF APIs

bull Apache Tomcat




School)









working day)


and rare diseases






11







in health


Plus de 150 TO








70 T0 en 32 langues



Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016


HeTOP

db

Application server

(Apache Tomcat)

Clients

EHTOP

service


PTS

db


NoSQL in 2015

HeTOP

service

bull Java J2EE

bull CISMeF APIs

bull Apache Tomcat




School)









working day)


and rare diseases






11







in health


Plus de 150 TO








70 T0 en 32 langues



Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016


PTS

db


NoSQL in 2015

HeTOP

service

bull Java J2EE

bull CISMeF APIs

bull Apache Tomcat




School)









working day)


and rare diseases






11







in health


Plus de 150 TO








70 T0 en 32 langues



Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016









working day)


and rare diseases






11







in health


Plus de 150 TO








70 T0 en 32 langues



Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016







in health


Plus de 150 TO








70 T0 en 32 langues



Inform 20142051008-1012 17

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016

HeTOP main figures

Terminologies

amp ontologies


hieacuterarchies

25 gt 580 000 gt 840 000 gt 220 000 gt 1 200 000

May 2010


32 gt 980 000 gt 2 300 000 gt 220 000 gt 4 000 000

May 2011

April 2013



February 2016


in English

Concepts

in French


69 (17 UMLS) 2358544 1171340 9134636 15348985 9697000

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016

Main figures





in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016


in UMLS (2015AA)

Source vocabulary


Number of Strings

(PT + syn + acro)

Number of CUIs


MeSH Fr [14] 105758 41229

MedDRA Fr [9] 73860 73608

WHO-ART Fr [5] 3631 3091

MTHMST Fr 1833 1636

ICPC2 [19] 702 722 (100)

MeSH Fr HeTOP



(CISMeF) [2]

58514 42693 (1824)


CISMeF) [2]

99184 94052 (2620)



in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016


in French

Source vocabulary




ICD10 Fr (WHO) [12] 26337 12143 (100)

ICD10 PCS (CISMeF) [2] 7297 7297 (5)

ICD9 Fr (WHO) [1] 10716 7356 (100)


ICF (WHO) [2] 1496 1495



ICNP [2] 2811 1158 (92)

SNOMED Int [2] 139792 96756 (9451)

ATC (WHO) [3] 5834 5757 (100)



in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016


in French

Source vocabulary


Number of Strings


Number of CUIs via

CISMeF mappings

WHO-ICPS [2] 424 105

RADLEX (CISMeF) [2] 9465423132230 240


[2]

58950 58500 (6071)

MEDLINEplus Fr


849 846 (100)

NCIT Fr (CISMeF) [2] 57827 56727 (6040)




Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016



Source vocabulary



OMIM Fr (CISMeF) [2] 7770 6904 (8884)


HPO (CISMeF) [2] 11127119089344 1541



Q-Codes 184


terminologies





HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016

HeTOP relationships


21082015

Source Term

(Terminology)

Target Term

(Terminology)

Number of

relations in

HeTOP


(MeSH)


NOS

(SNOMED Int)

537978


(HRDO)


(MedDRA)

56265


stimulants

(ATC)

Appetite stimulated

(WHOART)

653709


releasing hormone

(MeSH)


factor

(FMA)

286561


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016


none










several languages

HeTOP limits




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016




(NoSQL)















26



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016



Rouen

27



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016



28

TP FP FN P R F1

Anatomy 142 149 54 04880 07245 05832

Chemistry 153 38 108 08010 05862 06670

Devices 13 12 6 05200 06842 05909

Disorders 375 96 209 07962 06421 07109

Geography 14 4 7 07778 06667 07179

Live Beings 125 38 31 07669 08013 07837

Objects 3 16 28 01579 00968 01200

Phenotype 14 35 17 02857 04516 03500

Physiology 60 33 74 06452 04478 05286

Procedure 195 105 109 06500 06414 06457

Overall 1094 526 643 06753 06298 06518







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016







English





2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016



2015indexed wit







ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016



ANAT 151 340 64 03075 07023 04278 216 275 46 04399 08244 05737

CHEM 172 172 106 05000 06187 05531 257 87 63 07471 08031 07741

DEVI 17 22 9 04359 06538 05231 23 16 5 05897 08214 06866

DISO 465 485 267 04895 06352 05529 789 161 134 08305 08548 08425

GEOG 26 7 12 07879 06842 07324 28 5 11 08485 07179 07778

LIVB 170 124 94 05782 06439 06093 223 71 67 07585 07690 07637

OBJC 8 19 36 02963 01818 02254 8 19 36 02963 01818 02254

PHEN 13 47 41 02167 02407 02281 15 45 40 02500 02727 02609

PHYS 81 79 74 05063 05226 05143 102 58 67 06375 06036 06201

PROC 276 296 159 04825 06345 05482 384 188 96 06713 08000 07300

Overall 1 379 1 591 862 04643 06154 05293 2 045 925 565 06886 07835 07330



ANAT 90 401 498 01833 01531 01668 225 266 155 04582 05921 05166

CHEM 98 246 1 064 02849 00843 01301 250 94 211 07267 05423 06211

DEVI 7 32 56 01795 01111 01373 22 17 29 05641 04314 04889

DISO 276 674 1 782 02905 01341 01835 784 166 537 08253 05935 06904

GEOG 23 10 31 06970 04259 05287 28 5 25 08485 05283 06512

LIVB 94 200 381 03197 01979 02445 196 98 153 06667 05616 06096

OBJC 4 23 117 01481 00331 00541 12 15 105 04444 01026 01667

PHEN 11 49 130 01833 00780 01095 19 41 117 03167 01397 01939

PHYS 41 119 441 02563 00851 01277 93 67 305 05813 02337 03333

PROC 146 426 860 02552 01451 01850 405 167 307 07080 05688 06308

Overall 790 2 180 5 360 02660 01285 01732 2 034 936 1 944 06848 05113 05855


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016


mapping alignment



Conceptual Same CUI




Bag of words



CCAM-ICD10 CCAM-LPP

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016

33

Conceptual Same CUI

NLP Bag of words



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016



patient

N = 109 concepts

meacutedicaux

WEB

Fournisseurs de


bibliographiques

Fournisseurs de

terminologies

Etc

Donneacutees

cliniques

Donneacutees

omiques


scientifiques

francophones

N = 900 000


francophones

N = 110 000

Terminologies de

santeacute

N = 68


Alignement

et traduction ECMT

MTHeTOP

InfoRoute

indexation

2007

1995

2012

2010

Many thanks


Questions


01062016

Many thanks


Questions


01062016

01062016

Serveur terminologique inter-lingue : vers des ... · Microbiologie - Pôle Biologie) Unité de...

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